| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_1429 |
|---|
| Symbol | |
|---|
| ID | 5208383 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus sp. RS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009523 |
|---|
| Strand | - |
|---|
| Start bp | 1740152 |
|---|
| End bp | 1740814 |
|---|
| Gene Length | 663 bp |
|---|
| Protein Length | 220 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640595040 |
|---|
| Product | helix-hairpin-helix DNA-binding motif-containing protein |
|---|
| Protein accession | YP_001275777 |
|---|
| Protein GI | 148655572 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1555] DNA uptake protein and related DNA-binding proteins |
|---|
| TIGRFAM ID | [TIGR00426] competence protein ComEA helix-hairpin-helix repeat region
[TIGR01259] comEA protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.0894635 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 2 |
|---|
| Fosmid unclonability p-value | 0.000989669 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGAACTGC TCAGCGAATT AGCGCAGCGC AAGGCGCTGA TCGCAGCCGC GCTCCTGTTT
GCGCTCGGTG CTGGCGTGCT TGGACAGACA ATCCTGGAGT ATATGGCGCC ACCGACAGCG
CCACCCGCGG CAACCACGGA ATTCGTCGTC GATGAGGAGT TCACCGAAGA GACAGGCGGT
CGGGCAGCAG CGGAGCGTCC GGCGACGCCG ACAGCCATCC CGTTTATTGT CGCCTACGTA
AGCGGGGCGG TACGCGCGCC GGATGTCTAC CGGCTCCCCG GCGGTGCGCG GATCAAAGAC
CTGGTGCTGG CAGCTGGCGG TTTTGCCGAT GATGCCGACA TTGAGCGTAT CAACCTGGCA
GCCCCGATCA CCGATGGTCA GCACGTGCGT GTTCCGTGGA TCGGAGATGG AACCTCAGCA
GTGGAGATCA CACCAGCAGA GAGCCCGAAG GGCGGCAACT CTGGCGGCTT GCTGGATTTG
AACCGGGCAA CGGTTGCAGA ACTCGACGCC CTGCCGGGCA TCGGCAGCGT GCTGGCGAAT
CGGATTGTCG AATGGCGCGA ACGTGAAGGA CCGTTTCGAT CGGTCGATGA TCTCGGCAAA
GTGGAGGGCA TCGGTCCTGC GCTGCTGGCA AAACTTGCAC CGCTCGTGAC CGTTGCTCCA
TAA
|
|---|
| Protein sequence | MELLSELAQR KALIAAALLF ALGAGVLGQT ILEYMAPPTA PPAATTEFVV DEEFTEETGG
RAAAERPATP TAIPFIVAYV SGAVRAPDVY RLPGGARIKD LVLAAGGFAD DADIERINLA
APITDGQHVR VPWIGDGTSA VEITPAESPK GGNSGGLLDL NRATVAELDA LPGIGSVLAN
RIVEWREREG PFRSVDDLGK VEGIGPALLA KLAPLVTVAP
|
|---|
| |