| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_1419 |
|---|
| Symbol | |
|---|
| ID | 5208371 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus sp. RS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009523 |
|---|
| Strand | - |
|---|
| Start bp | 1728115 |
|---|
| End bp | 1729542 |
|---|
| Gene Length | 1428 bp |
|---|
| Protein Length | 475 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640595030 |
|---|
| Product | peptidase dimerisation domain-containing protein |
|---|
| Protein accession | YP_001275769 |
|---|
| Protein GI | 148655564 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.0033169 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.0160825 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACATGGC AAACATATTT GAACGAACAG CAGGACCGTT TTCTTGCTGA GTTGCTCGAT
TTTCTGCACA TTCCCAGTGT GTCGGCGCTG CCGGAGCACG CGGCTGATGT GCATCGCGCA
GCGGAGTGGG TCGCAGAACG GATGCGCGCC GCAGGGATCG AGTCGGTGCA GATTCTGCCA
ACCGGCGGGC ACCCGGTGGT GTACGGCGAC TGGTTGCATG CCCCTGGGAA GCCAACGGTG
TTGATCTATG GGCACTTCGA CACGCAACCT GCCGATCCGC TCGAGTTGTG GGATCATCCG
CCATTCGAGC CGGTGGTGCG TGATGGGCGG GTATATGCAC GCGGCGCTTC GGACGATAAG
GGAAACATGC TTCCGCCGAT CCTGGCGGTC GAGGCACTGT TGCGCACAAC CGGCGCGCTG
CCGGTCAACG TCAAGTTTCT GTTTGAAGGA CAGGAAGAAA TCGGCAGTCC GCAGATTCCG
GCGTTTGTAG CGGCGCACCG TGATATGCTG GCATGCGATC TGGTGATCAG CAGCGACGGC
GGACAGTGGA GCGAGACCGA GCCGGCGATC CTCACCGGTT TACGGGGCGG CTGCGGCGTC
CAGATCGATG TGCGTGGACC GAACCGGGAT CTGCACTCCG GTCTCTACGG TGGTGCGGTG
CAAAATCCGA TCCACGCGCT CACGGCGATC CTGGCATCGA TGCGCGGTGC AGATGGGCGC
ATTTTGATCG AAGGGTTCTA CGATGCTGTG CAACCGCTGA CCGACGACGA GCGGCGGCGG
TTTGCCTCGC TCCCCTTCGA CGAAGCCGCG TACATGGCGG ACCTGGGGGT GACAGCATTG
TGGGGCGAAG CAGGGTACAC GACGTATGAG CGTACCTGGG CGCGCCCCAC GCTGGAGATC
AACGGGATAT GGGGCGGCTT TCAAGGTGAA GGGGTGAAGA CGGTGTTGCC ATCTGAGGCG
CACGCCAAGC TGACGTGCCG ACTGGTCGCC AATCAGGACC CGGCGACGAT TGTGGCATTG
ATCACGGCGC ATGTGCAGAA GCATACGCCG CCGGGTGTCA CGGCGACGGT AACGCCGCTG
AAGTTTCTGG CGAAGCCGTA CCTTATGCCG TTCGATCATC CGGGTAATCG CGCAGCGCGC
GACATCCTGG TTTCCATGTA TGGTCGTGAA CCCTACGAGG TGCGCAGCGG CGGCAGCATT
CCGATCTGCA CCATTCTCCT GGACGAATTA GGGGTCTACA CGGTCAACTT TGCATTTGCA
CTGGAGGACG AACGCCAGCA TTCGCCGAAC GAGTTCTTCC GCCTGAGCAG TTTTCGCCGG
GGACAGGAGG GATATTGTAT GCTGCTGGAG CGACTGGCGG ATCTGGAGCC GAGGATCAAG
AACCAGGAAC CGAGAACCAG GAACCAGGAA CCAGGAACTG AGAACTGA
|
|---|
| Protein sequence | MTWQTYLNEQ QDRFLAELLD FLHIPSVSAL PEHAADVHRA AEWVAERMRA AGIESVQILP
TGGHPVVYGD WLHAPGKPTV LIYGHFDTQP ADPLELWDHP PFEPVVRDGR VYARGASDDK
GNMLPPILAV EALLRTTGAL PVNVKFLFEG QEEIGSPQIP AFVAAHRDML ACDLVISSDG
GQWSETEPAI LTGLRGGCGV QIDVRGPNRD LHSGLYGGAV QNPIHALTAI LASMRGADGR
ILIEGFYDAV QPLTDDERRR FASLPFDEAA YMADLGVTAL WGEAGYTTYE RTWARPTLEI
NGIWGGFQGE GVKTVLPSEA HAKLTCRLVA NQDPATIVAL ITAHVQKHTP PGVTATVTPL
KFLAKPYLMP FDHPGNRAAR DILVSMYGRE PYEVRSGGSI PICTILLDEL GVYTVNFAFA
LEDERQHSPN EFFRLSSFRR GQEGYCMLLE RLADLEPRIK NQEPRTRNQE PGTEN
|
|---|
| |