| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_1310 |
|---|
| Symbol | |
|---|
| ID | 5208262 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus sp. RS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009523 |
|---|
| Strand | + |
|---|
| Start bp | 1616871 |
|---|
| End bp | 1617668 |
|---|
| Gene Length | 798 bp |
|---|
| Protein Length | 265 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640594925 |
|---|
| Product | HAD family hydrolase |
|---|
| Protein accession | YP_001275664 |
|---|
| Protein GI | 148655459 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0647] Predicted sugar phosphatases of the HAD superfamily |
|---|
| TIGRFAM ID | [TIGR01452] phosphoglycolate/pyridoxal phosphate phosphatase family
[TIGR01457] HAD-superfamily subfamily IIA hydrolase, TIGR01457
[TIGR01460] Haloacid Dehalogenase Superfamily Class (subfamily) IIA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.300835 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATACCCG AATTGAACCG CTTCACTGCG GTGATCTTCG ATATGGACGG CGTGTTGTAC
CGCGGGTCGC GGGCATTGCC GGGGGTGAAC GAGCTGCTGG CGCTGTTCGA TGCGCGCGGC
GTGATCTATG CCTGCTGCAC CAACAACGCC ACAATGACCC CTGCTCAGTA CGAAGCCAAA
CTCGCAGCAA TGGGGATCCG TATGCCAGCT GCGCGCATTG TCACGTCATC GGTGGCGACG
CGACGCTGGC TCGAAACGCA GGCGCCGCGC GGCACGGGCG TGTTTGTGAT CGGTATGGAT
GGTCTGCGCA GTGCGCTCTT CGATGATGGC TACTTCGTGG AAGACGATGA ACATCCGGCA
TTCGTCGTGG TCGGCATGGA CTTCGAGGTG ACCTACCGCC GCCTGCGTAA GGCATGCCTG
CTCATCCGCG CTGGCGCGCG TTTCATTGGC ACAAATCCCG ATACAACGTT CCCGGCGGAG
GACGGGATCG TGCCAGGGTG CGGCGCGTTA CTGGCGCTCC TGCGCGTCAG CACCGAAACC
GAACCGTTCG TCATCGGCAA GCCCGGACCC ACCATGTTCC GCGCTGCTAT CGAGATTCTG
GGGGCGGACG CTACGCGCAC GCTGACCATC GGCGACCGAC TCGACACCGA CATCGCTGGC
GCCCGCGCTG CGGGGCTTGC CAGTGCGCTG GTGTTGACCG GCGTCACGAC GCCTGCCATG
CTGGAACAGA GCGCCATTCA GCCGGATTTT GTCTTCCGTG ATCTGATCGA ACTGCGCGAA
GCCTGGGCAG GCGCATAA
|
|---|
| Protein sequence | MIPELNRFTA VIFDMDGVLY RGSRALPGVN ELLALFDARG VIYACCTNNA TMTPAQYEAK
LAAMGIRMPA ARIVTSSVAT RRWLETQAPR GTGVFVIGMD GLRSALFDDG YFVEDDEHPA
FVVVGMDFEV TYRRLRKACL LIRAGARFIG TNPDTTFPAE DGIVPGCGAL LALLRVSTET
EPFVIGKPGP TMFRAAIEIL GADATRTLTI GDRLDTDIAG ARAAGLASAL VLTGVTTPAM
LEQSAIQPDF VFRDLIELRE AWAGA
|
|---|
| |