Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RoseRS_1268 |
Symbol | |
ID | 5208220 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus sp. RS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009523 |
Strand | + |
Start bp | 1565566 |
End bp | 1567302 |
Gene Length | 1737 bp |
Protein Length | 578 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 640594884 |
Product | PA14 domain-containing protein |
Protein accession | YP_001275623 |
Protein GI | 148655418 |
COG category | [R] General function prediction only |
COG ID | [COG3889] Predicted solute binding protein |
TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.29777 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCACGAC GATTTCAATC AGGACAGGCG CTCGTCGAGT TTGTTATCGC CTCGACGCTT ATCCTGCTGC TGCTGGCGGC TGCGGTCGAT ATCGGGCTGC TGTTCTTCAA CATGCAGGGG TTGACCACCG CTGCGCAGGA AGGCGCCACG TATGGCAGTC GTTATGTGAT CGTCCGATCG GATGGCGCGG TCGATCTCGA TTACGACATG ATCCGCACAC GCGTGCGCCA GGAAGCAGGA ACGACCGGCG GCATCAACTT CGTCAATATG TACGATCTTA ACAGTGATGC CATTCCCGAC GCCGCCGACA CCAACGGCGA CGGCGTGCTC GACCAGTTCC AGTACTTCCT CGACCAGAAC GGCGACGGGC GCGCAATCGG CGATCCGGTG ACCGGGCTGA TCCCCGCAGG AACCGAACCG TCCGGCTACG TCCGGTTGAT CGATCACTAC ATCCTGGTGC AAGCGATCGA GGATGTCTTC CCGTTCAACG GCAATCCGCT GGGACCGGAG GACGCCGACG GCAATCGCGC CAACGACCTG GCGCCCGACG TGGATACAAC GCCCTGCGCC AACCTGGCGG ATCCGAACCG GCAGTGCTAT GTCTTCGTCA TTGTGAAATC CGACTACAAT ACCGTGTTTG GCTTCACGCC CGCCTTTGGC GATAAGGTGC CGCTCAGTTC GCGCTTTGTC ATGCCGCTGC GCGCCGGTTT TGTCTCGCCG GGCGCGCCGA CCAATCCGCC GGTGGTGCAA ACCAATACGC CAACACCCAC GCCGACGAAT ACGCCGACGC CAACCGCAAC CAACACGCCA ACGCGCACAC CGACGAATAC GGCATCGCCG ACAACGACGA ATACGCCGAC CAATACGCGC ACGCCAACCA ATACGCCAAC GCGCACCAAT ACGCCGACAC GCACCAATAC GCCAACACCG AGTAATACGC CGACGCGCAC TCCCACATTC ACGCCGACCG CCACGCCATG CGCTGGCGGC ACAGGCAACG GTCTGCGTGG CGACTACTTC ATCTACACGC CGGGCAGCAG TGTGGGAACG ACGAACTTCT TCCCCGGCGC ACCGGTGGCG AGCCGCACCG AAAATATCAA CATGGCGCAG AACAATAACT CGCCCATTAC TGGCGTAGGA AATAATTACT TCTCCGTGCG CTGGACGGGT CAGGTTGAGC CGCTGTTCAG CGGGGAGTAT ACCTTCTTCG CCGATACTGA TGATGGTGTG CGCGTGTGGG TCAACGGCGT CCAGATCATC AATGACTGGC GCACCAAGTC TGGTGAAGCG AATGGCAGGA TCACCCTGAC CGCCTGCCAG CGGGTCAGCA TTACGGTTGA GTACTTCGAG TGGACCGGCA ACCAGCGCGC GATCCTCAGC TGGTCGCATG CGAACCAGCC GAAGCAGGTC ATTCCGGTTG CGCGGCTCTA CTCCAGCGGC GCGCCGCCGG CAACGGCGAC CCGTACGCTG ACGCCGTCGC GCACGCCGAC GTTCACGCCG AGCAACACGC CAAGGCCGAC CAACACGCCG ACGCCGAGCA ACACGCCGAG GCCGACCAAC ACGCCGACGC GCACCAATAC GCCGACCAAT ACGCCACCGG CGACCAATAC GCCGACGCGC ACGCCAACGT TCACGCCGAC GCGCACGCCG ACGTTCACAC CGTCGCTGAC GCCGTCGAAC ACGCCGACGC GCACGCCAAC GTTCACGCCG ACGCGCACGC CGGACACCGG TACGTAA
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Protein sequence | MARRFQSGQA LVEFVIASTL ILLLLAAAVD IGLLFFNMQG LTTAAQEGAT YGSRYVIVRS DGAVDLDYDM IRTRVRQEAG TTGGINFVNM YDLNSDAIPD AADTNGDGVL DQFQYFLDQN GDGRAIGDPV TGLIPAGTEP SGYVRLIDHY ILVQAIEDVF PFNGNPLGPE DADGNRANDL APDVDTTPCA NLADPNRQCY VFVIVKSDYN TVFGFTPAFG DKVPLSSRFV MPLRAGFVSP GAPTNPPVVQ TNTPTPTPTN TPTPTATNTP TRTPTNTASP TTTNTPTNTR TPTNTPTRTN TPTRTNTPTP SNTPTRTPTF TPTATPCAGG TGNGLRGDYF IYTPGSSVGT TNFFPGAPVA SRTENINMAQ NNNSPITGVG NNYFSVRWTG QVEPLFSGEY TFFADTDDGV RVWVNGVQII NDWRTKSGEA NGRITLTACQ RVSITVEYFE WTGNQRAILS WSHANQPKQV IPVARLYSSG APPATATRTL TPSRTPTFTP SNTPRPTNTP TPSNTPRPTN TPTRTNTPTN TPPATNTPTR TPTFTPTRTP TFTPSLTPSN TPTRTPTFTP TRTPDTGT
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