Gene RoseRS_1265 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRoseRS_1265 
SymbolrpoB 
ID5208217 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus sp. RS-1 
KingdomBacteria 
Replicon accessionNC_009523 
Strand
Start bp1556187 
End bp1559876 
Gene Length3690 bp 
Protein Length1229 aa 
Translation table11 
GC content59% 
IMG OID640594881 
ProductDNA-directed RNA polymerase subunit beta 
Protein accessionYP_001275620 
Protein GI148655415 
COG category[K] Transcription 
COG ID[COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit 
TIGRFAM ID[TIGR02013] DNA-directed RNA polymerase, beta subunit 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00716616 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGCCCCCGT TGACTCAAAG TGTTGTGCTC CAGCCATTGA TCGTGCCGAA CGATGTCGGC 
ATTGATGCGC TGCATCGCGG CAAGATCGAG CGCTATTCAT TCGCGCGCAT TTCAAACGCT
ATCGAATTGC CCAAACTGAT TGAAACGCAA CTGAACAGTT TCGAGTGGTT CCGCAAAGAA
GGGTTGCGTG AACTGTTTGA AGAGATTTCG CCGATTACCG ATTTCACCGG CAAAAATATG
GAATTGCGCT TCCTCGACTA TCATTTCGGG GAACCGCGCT ACAACGAGCA TGAGTGCCGC
GAACGGGGGA TTACCTATTC TGCACCGATC CGGGTCAATG TGCAGTTGCG CATCCTGAGC
ACCGGAGAGC TGAAAGAGAG TGAAATCTTC CTTGGCGATT TCCCGCTGAT GACAGAGAAC
GGCACCTTTG TCATCAACGG CGCCGAGCGC GTGGTGGTTT CCCAGTTGAT CCGATCGCCG
GGAGTCTATT TCAAAGAAGA GAAAGATCCG ACCTCCGGGC GCAGTCTCCA TTCGGCAAAA
TTGATCCCGA GTCGTGGCGC GTGGCTCGAG TTCGAGACCA ACAAGCGTGA TGTCATTTCG
GTCAAAGTCG ATCGCAAGCG CAAGATTCCG GTCACGATCC TCCTGCGCGC CGTTCTTGGA
TGGCGGGCGA ACCCCGACGG CAGCGGTCAG TGGGCGCCGG ATAACGAACT CGACCAGCGC
GGGCGTGATG AGGAGATCCT GGAACTGTTC GCGCACCTGG AGACCGGCGA CCATCAGTAC
ATCAAGGCGA CCCTCGATAA AGACCCGGCG CGCCATGCGA AGGAGGCGTT GCTGGAGTTG
TACAAGCGCC TGCGACCGGG CGATCCGCCG ACTCTCGATA ACGCGCGCAA TCTGATTGAG
GCGTTGCTCT TCAATCCGCG TCGTTACGAT TTGTCGCGCG TCGGGCGCTA TAAACTGAAT
AAGAACCTCT GGGAAAAAGA TACCCGCCCT GAAGTGCGTC GTCAGGCGCC CGACGTGAAG
GTGCGTGTGT TGCTCCCCGA CGATATTTTC AAGATCGTCG AGCGCATGAT TCAACTGAAC
AACGGTACGC CAGGACTGCG CGCCGATGAT ATCGATCACC TCGGCAACCG CCGTGTGCGC
ACCGTCGGCG AATTGATCCA GCAGCAGTTC CGCGTCGGTC TGCTGCGCAT GGAGCGCGTG
ATCAAAGAAC GCATGTCGCT GCAGGACCCG GAGACGGCCA CGCCAAATGC GCTGGTGAAT
ATTCGCCCGG TCGTCGCAGC CATGCGCGAG TTCTTCGGCG GGGCGCAACT CTCGCAGTTC
ATGGATCAGA CCAACCCGCT GGCGGAATTG ACCCACAAGC GCCGCCTCTC CGCTCTCGGT
CCGGGTGGTC TCAGTCGCGA TCGCGCCGGG TTCGAGGTGC GCGACGTGCA TCATTCGCAC
TATGGGCGCA TCTGCCCGGT GGAGACGCCG GAAGGACCAA ACATCGGTCT GATCGGCACC
ATGTCCACCT ATGCGCGGGT TAATGAAATG GGCTTCCTGG AGACGCCGTA TCGTAAGGTG
TACCGCGAGG TGCCCAACGC CAGCGAGTGG GAGCGCCAGG GATTGTTACT GCGCGATGTG
CGCGACCTGC GCACCGGCGA GTTGATCGCC GTGCGCGGCA CGCGTGTCGA TGCTGCGGTT
GCGCGCCGGA TAGCCGTTGC GCTGCTGCGC GGGCAGATTC TGCGTGAGGA TGTGGTCGAT
CCCACTACCG GCGAGGTGAT CGCCCACGCC GGGCAGGAAG TCAACCGCGC CCTGGCGGAG
CGGATCGTCG AAACGCCATT GAAGATCATC AAGATCCGTC CGGTTGTCTC GCAGGAGGTG
GATTATCTCT CCGCCGACGA GGAAGACAGG TTTGTCATTG TTCAGGCGAA CGCACCGCTA
GACGAGCATA ATCGCTTCCT TGAAGGAACC GTGTCGGTGC GCTACGCCGG CGATTTTGAT
GATGTGCCGA TTGAGCGCGT CGATTATATG GATGTGTCAC CCAAACAGGT GGTCAGCGTG
TCAACGGCGC TGATCCCCTT CCTGGAGCAC GACGACGCCA ACCGCGCGCT GATGGGGTCG
AATATGCAGC GACAGGCGGT GCCGCTCCTG CGTCCTGATG CGCCGATCGT CGGCACCGGC
ATGGAGTATG TGGCGGCGCG CGATAGCGGG CAGGTGGTGG TTGCCAAAGC TGATGGCGTC
GTTCTTTCGG CGACCGCTGA TGAGATCGTG ATCCTGGAGG ACGACGGCAA TGAGCGGTCG
TACCGCCTGC GTAAGTTTAT GCGCTCGAAC CAGGACACCT GTATCAATCA GCGCCCGATT
GTGTCACGTG GTCAGCGAGT GCGCAAGGGC GATATCATTG CCGACAGTTC CAGCACTGAT
AACGGCGAAC TGGCGCTCGG GCAGAATGTG CTGGTTGCGT TCATGCCGTG GGAAGGCGGC
AATTTTGAGG ATGCCATCCT GGTTTCAGAA CGCCTGGTGC GCGAAGATAT TTTCACCTCG
ATCCATATCG AAAAGTATGA GGTCGAAGCG CGCGACACCA AACTGGGACC GGAAGAGATT
ACCCGCGATA TTCCGAATGT CGGGCAGGAT AGCCTGCGTA ATCTGGATGA TCGCGGCATC
ATCTATATCG GCGCCGAGGT GCAACCGAAC GATATTCTCG TCGGCAAGAT CACACCGAAA
GGCGAAACCG ATCTCACGGC TGAGGAGCGT CTGCTGCGGG CAATCTTCGG CGAAAAAGCG
CGCGAAGTGA AGGACTCGTC GCTGCGGGTG CCGAACGGCG TGCGCGGCAA GGTCATCGAT
GTCAAGGTCT TTACCCGTGA TGACGATGTC GAACTGCCGG TCGGCGTCAA TCAGCGCGTC
GATGTGTTGC TGTGTCAGAA GCGCAAGATC TCGGCTGGCG ATAAGATGGC CGGTCGCCAT
GGGAACAAGG GCGTTGTCAG CCGCATTTTG CCGATCGAGG ATATGCCGTT TCTGCCCGAT
GGGACGCCGG TCGATATCAT TTTGAACCCG ATCGGCGTGC CAAGCCGTAT GAACATCGGT
CAGATTCTGG AGACGCATCT GGGATGGGCG GCTGCTCGCC TTGGCTATCG CGTCGCCACA
CCGGTGTTCG ATGGCGCGAC TGAGACGGAG ATCAAGGAAT GGCTCAAACG CGCCGATCTG
CCGCCTGATG GCAAGATCAC CCTCTACGAC GGGCGCACCG GCGAAGCGTT TGATCGCCCG
GTGACCGTCG GGTATATCTA TATGATGAAA CTGGCGCACC TGGTGGAGGA TAAGATCCAC
GCGCGCTCGA CCGGTCCATA CAGCCTGGTG ACGCAACAAC CGCTGGGCGG CAAGGCGCAG
TTCGGCGGTC AGCGCTTCGG CGAAATGGAA GTCTGGGCGC TGGAAGCGTA TGGCGCTGCC
TATACCCTCC AGGAAATGCT CACCGTGAAG TCGGACGATG TGGTGGGTCG CGTGAAGACG
TATGAGGCGA TCGTGAAGGG TGAGCCGATC CAGGAGGCTG GCGTTCCGGA AAGCTTCAAG
GTGCTGATCA AGGAATTGCA GTCGCTCGGT CTGTCGGTCG AGGTGCTGAG CGCCGATGAG
ACGCCGGTGG AACTGACCGA TGACGCGGAT AGCGATCTGG CGGCGCTCGA TGGAATCAAC
CTGTCGGGCA TGGAGCGTGG GGAATTCTAA
 
Protein sequence
MPPLTQSVVL QPLIVPNDVG IDALHRGKIE RYSFARISNA IELPKLIETQ LNSFEWFRKE 
GLRELFEEIS PITDFTGKNM ELRFLDYHFG EPRYNEHECR ERGITYSAPI RVNVQLRILS
TGELKESEIF LGDFPLMTEN GTFVINGAER VVVSQLIRSP GVYFKEEKDP TSGRSLHSAK
LIPSRGAWLE FETNKRDVIS VKVDRKRKIP VTILLRAVLG WRANPDGSGQ WAPDNELDQR
GRDEEILELF AHLETGDHQY IKATLDKDPA RHAKEALLEL YKRLRPGDPP TLDNARNLIE
ALLFNPRRYD LSRVGRYKLN KNLWEKDTRP EVRRQAPDVK VRVLLPDDIF KIVERMIQLN
NGTPGLRADD IDHLGNRRVR TVGELIQQQF RVGLLRMERV IKERMSLQDP ETATPNALVN
IRPVVAAMRE FFGGAQLSQF MDQTNPLAEL THKRRLSALG PGGLSRDRAG FEVRDVHHSH
YGRICPVETP EGPNIGLIGT MSTYARVNEM GFLETPYRKV YREVPNASEW ERQGLLLRDV
RDLRTGELIA VRGTRVDAAV ARRIAVALLR GQILREDVVD PTTGEVIAHA GQEVNRALAE
RIVETPLKII KIRPVVSQEV DYLSADEEDR FVIVQANAPL DEHNRFLEGT VSVRYAGDFD
DVPIERVDYM DVSPKQVVSV STALIPFLEH DDANRALMGS NMQRQAVPLL RPDAPIVGTG
MEYVAARDSG QVVVAKADGV VLSATADEIV ILEDDGNERS YRLRKFMRSN QDTCINQRPI
VSRGQRVRKG DIIADSSSTD NGELALGQNV LVAFMPWEGG NFEDAILVSE RLVREDIFTS
IHIEKYEVEA RDTKLGPEEI TRDIPNVGQD SLRNLDDRGI IYIGAEVQPN DILVGKITPK
GETDLTAEER LLRAIFGEKA REVKDSSLRV PNGVRGKVID VKVFTRDDDV ELPVGVNQRV
DVLLCQKRKI SAGDKMAGRH GNKGVVSRIL PIEDMPFLPD GTPVDIILNP IGVPSRMNIG
QILETHLGWA AARLGYRVAT PVFDGATETE IKEWLKRADL PPDGKITLYD GRTGEAFDRP
VTVGYIYMMK LAHLVEDKIH ARSTGPYSLV TQQPLGGKAQ FGGQRFGEME VWALEAYGAA
YTLQEMLTVK SDDVVGRVKT YEAIVKGEPI QEAGVPESFK VLIKELQSLG LSVEVLSADE
TPVELTDDAD SDLAALDGIN LSGMERGEF