| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_1264 |
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| Symbol | |
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| ID | 5208216 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus sp. RS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009523 |
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| Strand | - |
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| Start bp | 1551587 |
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| End bp | 1556101 |
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| Gene Length | 4515 bp |
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| Protein Length | 1504 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640594880 |
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| Product | DNA-directed RNA polymerase, beta' subunit |
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| Protein accession | YP_001275619 |
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| Protein GI | 148655414 |
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| COG category | [K] Transcription |
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| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
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| TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.00242857 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCTCGAAA TCAACGATTT TAGCGCCATT CGCATCAGTC TCGCGTCGCC TGAAGATATT
CTGAGCTGGT CGCACGGCGA GGTGACCAAG CCGGAGACGA TCAACTACCG CACACTGAAA
CCCGAACGCG ACGGTCTGTT CTGTGAGCGC ATCTTCGGTC CGACCAAGGA CTGGGAATGC
TACTGCGGCA AGTATAAGCG TGTGCGCTAT AAGGGCGTCG TCTGCGACAA GTGCGGCGTT
GAGGTGACCC GCTCGAAGGT GCGACGTGAG CGCATGGGGC ATATTTCGCT GGCGTCGCCG
GTATCGCATA TCTGGTTTGT GAAGGGCACG CCGAGCCGCC TCGGTCTGCT GCTCGACATT
TCGCCGCGCA ACCTGGAGCG TGTGCTGTAC TTCGCCTCAT ACATGATCGT GCACGTTGAT
GAGGAGTTGA AGGCGCAGGC GCGTGAGGCG TTGCAGGCGG AATACCGCGA AAAGCGCGAG
CGTATCCAGC AGGAAGCCGA GAGCAAGCAG ATCGAACTCT CGACCCAACT AACGCAGGAC
CTCGGCGGCA TGGAGAGCGC CCAGATCACG ACGCAGCGGC GGATCGAGGA GGAATATCGC
CGCCTGCGCG ATGAGATCAG CGCCGAAGCG GAACGCCTGC GCAGCGATCT CGAAGAGAAG
CAGGGGGAGG CGGCGGAGGA GGATATTCTC TTCCGCGGAA CGGTGCTGAT CGAAGAGGGT
GAGATTATCA CCGAAAAGAC CCTCGATGCG CTTGATGAAT TGCTCGATCA GGAACTGGAG
ACGCTTGAGC AGCGCAAGCA GCGCGATCTT GAGGACGCCG AGCAGTTGAC CGGCGCCGAG
CGCGAGCGCA AGGAGTATGA AGCCAGCCAG GAACGGGAGC GCTTGCAGGA GCGCTTGCAG
AGCGAACTTG ATCGCCTGGT GCGCGAGGAA AAGGAGCGCC TCGAACAGAT CGATTCGATC
AAACTGAAGC GCATTCTGAG TGAACAGGAG TATCGCGCGC TCCGTGAGAT TGCGCCGGGC
GTGTTTCGCG CCGATATGGG TGCAGGGGCG GTGCGCGACA TGATCGTGCG CACGATCGAC
CTCGATAAAC TGGCGGAAGA ATTGCAGAAC GAGGTGTATA CCACGCAGGG GCAGCGGCGC
AAGAAGGCGA CCAAACGCCT GCGCGTGGTC GAGGCGTTCC GCAAGAGCGG CAATCGCCCT
GAGTGGATGA TCCTGACGGT GCTGCCGGTC ATTCCGCCCG ACCTGCGCCC GATGGTGCAA
CTCGATGGCG GTCGTTTCGC CACCAGTGAC CTCAACGACC TGTACCGGCG CGTCATCAAT
CGCAATAATC GCCTGAAGCG CCTGATGGAA CTCAACGCGC CCGAGATCAT CGTGCGCAAC
GAGAAGCGCA TGCTCCAGGA AGCGGTCGAT GCGCTGATCG ATAATGGGCG CCGCGGGCGC
GCCGTGTCGG GCAAGGGAAA GCACCGCCTG AAGAGCCTGA GCGATATGCT CAAAGGCAAG
CAGGGGCGCT TCCGCCAGAA CCTGCTCGGT AAGCGCGTCG ACTACTCAGG ACGCTCGGTG
ATCGTGGTTG GACCAGACCT GAAACTGCAC CAGTGCGGTC TGCCTAAGAA AATGGCGCTC
GAACTGTTCA AGCCGTTCGT GATGCGCCGC CTGGTGGAAA AAGGGTTCGC CCATAACATC
AAAAGCGCCA AACGCATCGT CGAGCGCGTT CGCCCTGAAG TGTGGGACGT GCTCGAAGAG
GTGATCAAGG ACTACCTGGT GCTGCTGAAC CGCGCTCCGT CGCTGCACCG CCTCTCGATC
CAGGCATTCG AAGCCAAACT GATCGAGGGT TCGGCGATCC AGTTGCATCC GCTCGTCTGC
GCGGCATTCA ATGCCGACTT CGATGGCGAC CAGATGGCGG TGCACGTGCC GCTCTCGCGT
AAGGCGCAGG AAGAAGCGCG CATGCGCATG CTGTCGAAGT ACAACCTGTT GTCGCCAGCC
ACCGGTGATC CGATCATTAC ACCGTCACAG GATATCGTGC TTGGGTGTTA CTACCTGACG
ATGGTGAAAG ACGGGGCAAA GGGCAGCGGT AAGATGTTCG CCTCGATCGA TGAGGCGTTG
CTGGCATACG ACAAAGGACT GATCGATATC CAGGCGCCGA TCTTTGTTCG CATGACGGGG
ACGGTGTATG GTGAGAGCGA TCGACCGGTG CGGATGCTCA GCCCCGACGA AAACGGCGCG
CCCCGGATGT TGCTGGAGAC GACGATTGGA CGAATCATTT TCAACAATGA ACTGCTCGAA
CCATTGCGCT TCCGCAATCG CCTGATCGCC AAAAAAGGGT TGCGTGAGAT CATCGCCGAC
TGCTACAAAT ACTATACGAA TCTCAACAAC CTGACCGAAG CCGATCTCGA CACGATTCGC
GCGATGTACG GCGACCGTCC GCGCGATGAC CTGGCGCGGT ATTTTGGTTC GGAAATGACG
GCCAGCCAGG CCGACCGGAT CAAGACGCTG GGATTCAGAT ATGCAACGCG CGGCGGTATG
ACGATTGGCG TCGATGATAT CGAAATTCCG CCAAAGAAGC AGGACATTCT TGCCGAAGCC
GAAAAGCGCG TCACTGAGGT GGAACGACAG TTCCGGCGCG GTCTGATCAC CGAAGAGGAG
CGCTACCGCG AAATTGTGGA AATCTGGCAG AATGCCACCA AACAAACCAC CGAAGCGGTC
AAGCAGCATC TGAATCCGTT CGGTCCGGTG GCGATGATGG TCAATTCCGC AGCCCGCGGG
AATATCAACC AGTTGAGCCA GATGGCCGGT ATGCGTGGTT TGATGTCCGA CCCGACCGGT
CGGATCATCG AACTGCCGAT CAAGAGCAAC TTCCGGGAAG GTCTCTCGGT GCTCGAATAC
TTTGTGTCAA CCCACGGCGG ACGCAAAGGT CTGGCGGATA CCGCGCTGCG CACGGCGGAC
GCCGGGTATC TGACCCGCCG TCTGATCGAT GTGGCGCAGG ACAATATCGT GACCATCGAT
GACTGTGGGA CTGATGAGGG ATTGTGGATC TACCGCGCCG ATGACCGCGA AGTCCTGCAG
GACTTCGAGC AGCGCATCCT GGGTCGTCTG CTGGCAGCGC CCCTGGTCGA TCCACGAACG
GGTGAGATTC TTGCCAATCG TAATGATGAG ATCGATGAAG CGCTGGTGCG CAAGTGCAAG
GAACTTGCCA TCGATGCGGT GTATGTCCGC TCGCCGCTGG CATGCAAAGC CGACTACGGC
ATCTGCCGCA TGTGCTATGG GCGCAACCTG GCAACCGGCA AACTGGTCGA TATCGGCGAG
GCGGTCGGCA TTATTGCTGC ACAATCGATT GGTGAGCCGG GCACGCAGTT GACGCTGCGC
ACCTTCCATA CCGGCGGTGT GGCGTCGGCA GACGACATTA CCCAGGGTTT GCCGCGTGTT
CAGGAGATTT TCGAGGCGCG CACGCCGAAG GGCAAGGCGA TCCTGGCGGA GATCGACGGC
ATCGTCGAAC TGGTGCGCGA AGACGAGGTG CGGAAGATCC GCGTCGTCGC AACCGAACTC
TACACCGACG ATCACGAACT GCCGCCGCAC TATGAGCCGG TCGTGGCGGA CGGGGCGCAG
GTGAACGAGG GTGATGTGCT GGCGCAGAGC AATCGGGCGG ATCTCAATGG CGAACCGATT
GTTGCACGGA TCGCCGGTGT TGTGCGCATA GGCGCCGGAC AGATCAGCGT GATCAACGAA
GAGCGTGAGG TGCGCGAAGT GGTGGCGCCG CACACGGCGC GCCTGGCGCC GGGCATCGAG
AACGGAGCGC GCGTCGTTGC CGGGCAGCAC CTGACCGAGG GTTCCGCCGA TCCGCAGGAA
CTTCTTGCAC TCCAGGGGCG CGAAGCGGTG CAGCGCTACC TGGTCAACGA GGCGCAAAAA
GTGTATCGCT CGCAGGGTGT CGATATTAAC GATAAGCATA TCGAAGTCAT CGTGCGCCAG
ATGCTGCGCC GCGTGCGGAT CGAAGAGCCG GGCGACACCG ATTACCTGCC GGGTGAACTG
ATCGACTCGA CGGAATTCGT GCGGAAGAAT GCCGAAATCA TCAGTCAGGG CGGTGAGCCG
GCGACGGCGT CAACGATGCT GCTGGGCATC ACCAAGGCGT CGCTGACGAC CGATAGTTTC
CTGGCGGCGG CATCGTTCCA GGAGACGACC CGCGTGCTGA CCGAAGCAGC GATCACCGGC
AAGGTCGATT ACCTGCGGGG TCTGAAGGAG AATGTCGTCA TCGGCAAACT CATTCCGGCT
GGCACAGGGA TCGAGAAGCG ACGCCAGCTT GCTGAGGAGA TCATCGGCGA ACTGGCGAAT
GTTGCACCTG CGACCAGTAC GGCGGTCGTC GAGCAGGAAC GTCCCGACCG CGAAGCCGAT
GAGGCGTTGC GGCGTCGGTT GCGGGCGCTG ATCGGCGGCG ATGGCGATGA TGGTGAGAGG
AACAATGGCG ACTTCGATGA TCAGGTCGGT GAGGATGTGG TGATCCCGCC TGATGATGAC
GATCAGGAAG CGTGA
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| Protein sequence | MLEINDFSAI RISLASPEDI LSWSHGEVTK PETINYRTLK PERDGLFCER IFGPTKDWEC
YCGKYKRVRY KGVVCDKCGV EVTRSKVRRE RMGHISLASP VSHIWFVKGT PSRLGLLLDI
SPRNLERVLY FASYMIVHVD EELKAQAREA LQAEYREKRE RIQQEAESKQ IELSTQLTQD
LGGMESAQIT TQRRIEEEYR RLRDEISAEA ERLRSDLEEK QGEAAEEDIL FRGTVLIEEG
EIITEKTLDA LDELLDQELE TLEQRKQRDL EDAEQLTGAE RERKEYEASQ ERERLQERLQ
SELDRLVREE KERLEQIDSI KLKRILSEQE YRALREIAPG VFRADMGAGA VRDMIVRTID
LDKLAEELQN EVYTTQGQRR KKATKRLRVV EAFRKSGNRP EWMILTVLPV IPPDLRPMVQ
LDGGRFATSD LNDLYRRVIN RNNRLKRLME LNAPEIIVRN EKRMLQEAVD ALIDNGRRGR
AVSGKGKHRL KSLSDMLKGK QGRFRQNLLG KRVDYSGRSV IVVGPDLKLH QCGLPKKMAL
ELFKPFVMRR LVEKGFAHNI KSAKRIVERV RPEVWDVLEE VIKDYLVLLN RAPSLHRLSI
QAFEAKLIEG SAIQLHPLVC AAFNADFDGD QMAVHVPLSR KAQEEARMRM LSKYNLLSPA
TGDPIITPSQ DIVLGCYYLT MVKDGAKGSG KMFASIDEAL LAYDKGLIDI QAPIFVRMTG
TVYGESDRPV RMLSPDENGA PRMLLETTIG RIIFNNELLE PLRFRNRLIA KKGLREIIAD
CYKYYTNLNN LTEADLDTIR AMYGDRPRDD LARYFGSEMT ASQADRIKTL GFRYATRGGM
TIGVDDIEIP PKKQDILAEA EKRVTEVERQ FRRGLITEEE RYREIVEIWQ NATKQTTEAV
KQHLNPFGPV AMMVNSAARG NINQLSQMAG MRGLMSDPTG RIIELPIKSN FREGLSVLEY
FVSTHGGRKG LADTALRTAD AGYLTRRLID VAQDNIVTID DCGTDEGLWI YRADDREVLQ
DFEQRILGRL LAAPLVDPRT GEILANRNDE IDEALVRKCK ELAIDAVYVR SPLACKADYG
ICRMCYGRNL ATGKLVDIGE AVGIIAAQSI GEPGTQLTLR TFHTGGVASA DDITQGLPRV
QEIFEARTPK GKAILAEIDG IVELVREDEV RKIRVVATEL YTDDHELPPH YEPVVADGAQ
VNEGDVLAQS NRADLNGEPI VARIAGVVRI GAGQISVINE EREVREVVAP HTARLAPGIE
NGARVVAGQH LTEGSADPQE LLALQGREAV QRYLVNEAQK VYRSQGVDIN DKHIEVIVRQ
MLRRVRIEEP GDTDYLPGEL IDSTEFVRKN AEIISQGGEP ATASTMLLGI TKASLTTDSF
LAAASFQETT RVLTEAAITG KVDYLRGLKE NVVIGKLIPA GTGIEKRRQL AEEIIGELAN
VAPATSTAVV EQERPDREAD EALRRRLRAL IGGDGDDGER NNGDFDDQVG EDVVIPPDDD
DQEA
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