| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_1134 |
|---|
| Symbol | |
|---|
| ID | 5208081 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus sp. RS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009523 |
|---|
| Strand | + |
|---|
| Start bp | 1411323 |
|---|
| End bp | 1412789 |
|---|
| Gene Length | 1467 bp |
|---|
| Protein Length | 488 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 640594747 |
|---|
| Product | undecaprenyl-phosphate galactose phosphotransferase |
|---|
| Protein accession | YP_001275491 |
|---|
| Protein GI | 148655286 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG2148] Sugar transferases involved in lipopolysaccharide synthesis |
|---|
| TIGRFAM ID | [TIGR03022] Undecaprenyl-phosphate galactose phosphotransferase, WbaP
[TIGR03025] exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.00759268 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.921575 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTATCT ATGAAGGGAT TGCAACCGCC ACACAGCCAC GGAGCAGCGC CCGTCGCGTT
GATCGGCGGC TTCTACTCGG CATGCTGGTC CTCAATGACA TTCTAATCGT ACTGACCAGT
TTCGCAGTGG CGTATGCAGT GCGTTTCTGG AGCGGACTGC CTTTCTTCAA TGAGGGATGG
GTCAATCCGC AGTTCTACGC CGCCGTTGTG CTGGCAATGA CGCCGGTGTA TCTCACCCTT
TTCCACATCT ACGGGCTGTA CAACCCGGTC AACCTGCTCG GCGGCGCAAC CGAGTACGCC
CGCATGTTCA ACGCCGTCAC AACAGGAATG TTGCTGGTCA TCATCGTCAG TTTCCTGTTC
CCAGAGTTTG TCGTTGCACG TGGCTTTCTG CTCCTGTCAT GGGGATTGCT GGTCGTCTGC
GGTATTAGCG GGCGATTCGT GGCACGTCGT TTTGTCTATG CGCAGCGTCG GGCCGGGCGA
TTTGTGGATC GCGCTCTGAT CATCGGCGCA AACCCGGAAG GGATCGCGAT TGCCGAGCAA
TTGCGCTCAG CAAAAGTCAA TGGCATGCAT ATCATCGGGT TCATCGATGA CTACCTTCCT
GTGGGAAGCG AGCCAATCCC CGGTGTGCCG GTGTTGAGCA CATCAGCATC GTTTGCACTG
CAGATCCGCC TCCACGACAT CGATACGGTC ATCGTCGCCA ATACCGCTAT GATGCGCGAG
CAGTTGCTCT CACTTTACAG CACGCTCGAC ACCTTTCAGG ATGTCGAGGT ACGCCTGGCG
TCGGGCTTGT TCGAGTTGCT GACAACCGGC GTGCGGGTGC GCGAAGAGGG GTTCGTGCCG
CTGCTGGTGC TCAACAAAAC CCGCATCACC GGCGTACACT TGATTGCGAA GACCATCCTG
GATTACACCA TCGCAGCAAC TGCGTTGATC GTCCTGCTTC CCTTCTTCAT TATTGTCGCG
TACCTGATCA AGCGTGACTC TCCCGGGCCG ATCATCTACC GGCGACGGGT CGTGGGTCAG
GGGCGGCGTG AATTCGATGC CTTCAAACTG CGCACCATGC ACGTCGATGG CGACCGGTTG
CTCACTCCGG AGCAGAAACG CGAACTCGAA GAACATGGCA AGTTGAAAGA CGACCCGCGC
ATTACCAGGG TCGGCGCATT CCTGCGCAAG TACAGCCTCG ATGAACTGCC GCAACTGGTC
AACGTACTCC GCGGCGAGAT GAGCCTGATC GGTCCGCGCA TGATTACACG CCAGGAACTG
GAGAAGTTCG GTAAATGGCA ACACAACCTC TCGACCGTAA AGCCGGGATT GACCGGTCTG
TGGCAGGTAA GCGGTCGCAG TGATCTCTCC TACGAAGATC GGGTGCGCCT CGATATGCAC
TACATCCGTA ACCACACCAT CTGGCTGGAC CTGCAAATAC TCTTCCAGAC GATACCGGCA
CTGCTGACCG GTCGCGGAGC CTACTGA
|
|---|
| Protein sequence | MAIYEGIATA TQPRSSARRV DRRLLLGMLV LNDILIVLTS FAVAYAVRFW SGLPFFNEGW
VNPQFYAAVV LAMTPVYLTL FHIYGLYNPV NLLGGATEYA RMFNAVTTGM LLVIIVSFLF
PEFVVARGFL LLSWGLLVVC GISGRFVARR FVYAQRRAGR FVDRALIIGA NPEGIAIAEQ
LRSAKVNGMH IIGFIDDYLP VGSEPIPGVP VLSTSASFAL QIRLHDIDTV IVANTAMMRE
QLLSLYSTLD TFQDVEVRLA SGLFELLTTG VRVREEGFVP LLVLNKTRIT GVHLIAKTIL
DYTIAATALI VLLPFFIIVA YLIKRDSPGP IIYRRRVVGQ GRREFDAFKL RTMHVDGDRL
LTPEQKRELE EHGKLKDDPR ITRVGAFLRK YSLDELPQLV NVLRGEMSLI GPRMITRQEL
EKFGKWQHNL STVKPGLTGL WQVSGRSDLS YEDRVRLDMH YIRNHTIWLD LQILFQTIPA
LLTGRGAY
|
|---|
| |