| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_1116 |
|---|
| Symbol | |
|---|
| ID | 5208063 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus sp. RS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009523 |
|---|
| Strand | - |
|---|
| Start bp | 1391162 |
|---|
| End bp | 1392265 |
|---|
| Gene Length | 1104 bp |
|---|
| Protein Length | 367 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640594729 |
|---|
| Product | CaCA family Na(+)/Ca(+) antiporter |
|---|
| Protein accession | YP_001275473 |
|---|
| Protein GI | 148655268 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0530] Ca2+/Na+ antiporter |
|---|
| TIGRFAM ID | [TIGR00367] K+-dependent Na+/Ca+ exchanger related-protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.47681 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.852669 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATATCG TTACCATCGT GCTCTTTGTT CTTGGGCTGG CGCTTCTGAT CGTCGGGGCG
GAGGGCCTGG TGCGCGGCGC GTCGCGCATG GCGCTGGGGC TGGGTATTTC GCCGCTGGTT
GTAGGGTTGA CAGTCGTCGC TTTCGGCACC AGCGCGCCGG AACTGGCAGT CAGCATTCAG
TCGGCGTTGT CTGGTCCAAA TGGGGCGGAT GTGGCATTGG GCAATGTGGT TGGCAGCAAT
ATCGCCAATG TGCTGCTGAT CCTGGGGATT TCGGCAGCAA TTACGCCGCT TGTCGTTCAG
CAGCAACTGA TCCGCCTTGA CGTGCCGCTG ATGATTGGCA TATCGGTGGT TGTCTTCGTC
ATGGCGCTCG ATGGGACCAT CAGCCGGATC GACGGTCTCA TTCTGTTTGC CGGCATCATC
GCCTACACCG TTTTCGCCAT TCGCCAGAGC CGTCAGGAGA GCGCCGAAGT GCAGGAAGAG
TACCATGCAG AGTTCGATGC CAATCGACCG CAATCGATTG GCGACTGGCT CAAAAATGTT
GCTTTTCTGA TCGGCGGCCT TGCACTGCTG GTCGTCGGAT CACGCTGGAT GGTCGATGGC
GCGGTCAGTT TCGCGCGCGT GTTCGGCGTC AGCGAACTGG TGATTGGATT AACGATTGTG
GCAGTCGGAA CCTCACTGCC GGAAATCGCA ACCTCAATCG TGGCAGCGCT GCGCGGCGAA
CGTGATATTG CGGTTGGCAA TGTCGTGGGG AGTAATATCT TCAATCTGCT CTCGGTACTT
GGGCTGTCAA GCGTTGTCGC GCCTGCTGGC ATCAGCGTCG CACCCGCAGC GCTCAATTTC
GATATGCCGG TGATGCTTGC CGTTGCCGTC GCCTGTTTGC CAATTTTCTT CACCGGCAGG
TTGATCGCTC GCTGGGAAGG CTGGCTGTTT TTGGGGTACT ATATTGCCTA TACGCTCTAC
CTGATCCTGG CGGCGTCGCA GCACGATATT CTGCCAGCAT TCAGCGCAGT GATGGGGCTG
TTCGTCCTGC CTTTGACGGC AGTGACCCTC GTGTTTCTGG CATGGCGCGC GCTCCGCGCT
GAGCGACGTG TGGCGCTTCC GTGA
|
|---|
| Protein sequence | MDIVTIVLFV LGLALLIVGA EGLVRGASRM ALGLGISPLV VGLTVVAFGT SAPELAVSIQ
SALSGPNGAD VALGNVVGSN IANVLLILGI SAAITPLVVQ QQLIRLDVPL MIGISVVVFV
MALDGTISRI DGLILFAGII AYTVFAIRQS RQESAEVQEE YHAEFDANRP QSIGDWLKNV
AFLIGGLALL VVGSRWMVDG AVSFARVFGV SELVIGLTIV AVGTSLPEIA TSIVAALRGE
RDIAVGNVVG SNIFNLLSVL GLSSVVAPAG ISVAPAALNF DMPVMLAVAV ACLPIFFTGR
LIARWEGWLF LGYYIAYTLY LILAASQHDI LPAFSAVMGL FVLPLTAVTL VFLAWRALRA
ERRVALP
|
|---|
| |