| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_0972 |
|---|
| Symbol | |
|---|
| ID | 5207918 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus sp. RS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009523 |
|---|
| Strand | + |
|---|
| Start bp | 1195954 |
|---|
| End bp | 1196661 |
|---|
| Gene Length | 708 bp |
|---|
| Protein Length | 235 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640594586 |
|---|
| Product | hydrogenase accessory protein HypB |
|---|
| Protein accession | YP_001275331 |
|---|
| Protein GI | 148655126 |
|---|
| COG category | [K] Transcription
[O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0378] Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase |
|---|
| TIGRFAM ID | [TIGR00073] hydrogenase accessory protein HypB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.423618 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAACGC CACGACTCCT TGAAATCCGC AAGGGTGTGC TCAGCAAGAA TGATCGTCTG
GCTGCTGGAT TACGCGCTCG CTTTCTCCAA TCTGGCGTCT TCGTGGTCAA TCTGCTTTCC
AGCCCCGGCG CCGGCAAGAC TCGTCTGCTC GAAGAAACAT TGCGGCGAAT GCACGGCAGG
CTGCGCGTGG CGGCGATTGT CGGCGATCTG GCGACCGACA ACGACGCGCA GCGATTGGCG
CGCAGCGGCG CCCCGGTGCG GCAGATTCAG ACCGGCGACA TGTGCCACCT GGAAGCGCAC
CTGATCGAGC AGCATCTGGA AGGCTGGAAT CTCGACGAAC TCGATGTGTT GTTCATCGAG
AATGTCGGCA ACCTGGTTTG CCCGACAGGG TACGACCTGG GAGAGGCGGC GCGCGTGGTG
ATCCTTTCGG TGACGGAAGG TGAGGACAAG CCGTTGAAAT ATCCGGGCGC GTTTATATCC
GCCGATTGCA TTGTGGTGAC CAAGATCGAT CTGGCGGAGG CGGTTGAGTT CGATATGCGC
GCTGTCGAAG CGAACATTGC CGCCGTCCAT CCCGGTGTTC CGGTGATCTC CACCTCGGTG
CGCACCGGCG CGGGGCTGGA CGACTGGATT GCCTGGCTTG ATGCGCGGCG ATATGAAACG
ATGGCGGTGG GAACTCCTTC TCCTGGCTCA CGTGAAGGTC TGACGTAA
|
|---|
| Protein sequence | MATPRLLEIR KGVLSKNDRL AAGLRARFLQ SGVFVVNLLS SPGAGKTRLL EETLRRMHGR
LRVAAIVGDL ATDNDAQRLA RSGAPVRQIQ TGDMCHLEAH LIEQHLEGWN LDELDVLFIE
NVGNLVCPTG YDLGEAARVV ILSVTEGEDK PLKYPGAFIS ADCIVVTKID LAEAVEFDMR
AVEANIAAVH PGVPVISTSV RTGAGLDDWI AWLDARRYET MAVGTPSPGS REGLT
|
|---|
| |