| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_0954 |
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| Symbol | |
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| ID | 5207900 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus sp. RS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009523 |
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| Strand | - |
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| Start bp | 1177634 |
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| End bp | 1179355 |
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| Gene Length | 1722 bp |
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| Protein Length | 573 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640594568 |
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| Product | thiamine pyrophosphate binding domain-containing protein |
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| Protein accession | YP_001275313 |
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| Protein GI | 148655108 |
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| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
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| COG ID | [COG0028] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCATGGCG GAGATCTGGT GGCTCAGGCG CTCCAGGCGC ATGGCGTGCG CTTCGTCTTT
ACGTTGACCG GCGGGCATAT CGCTCCTGTT CTGGTTGGCT GTCACCAACG CGGCATTCGG
GTGATCGACA CCCGCCACGA GGCGACCGCC GTCTTTGCTG CCGATGCTGT TGCGCGCCTG
ACCGGCATTC CCGGTGTCGC CGTGGTCACT GCCGGCCCAG GGGTGACGAA TACCATCACC
GCAATCAAAA ATGCGCAGAT GGCGCAATCG CCGCTGGTGC TGATCGGTGG CGCCACGGCA
ACAGCGCTGC GTGGGCGCGG CGCACTCCAG GATATCGACC AGATGACGCT GATGAAGTCG
CTCACGAAAT GGCGTCGGTC GGTGCGCCGT GTGCGTGATC TCATCCCGAC GCTGGAAGAG
GCGTTCTTCC GCGCTCGTGA CGGCGTTCCC GGACCGGTGT TCGTCGAACT GCCCATCGAT
CTGCTGTACG ATGAGCAGGT GGTGCGCCAG TGGTATGGTC TCAAGCGCAT CGGTCGATCC
CCGGCGCAAT GGGCTACCTG GGTCTCCCGC AGCGTATGGG TTCACCACCT GTTCGCCGGC
GCTCAGCAAC AAGCGGTGGT AAAGCCGCGC CCTGTGCCAC AACGCGAACC AGACCAGCGC
GACATACACG CAGCCAGTCT CGCCCTGGCG ACGGCAGAGC GTCCGTTGCT TCTGGCAGGA
AGCCAGGCTG TCCTTGATCC CGCGTCTGTC GATGCACTGG CGCGCGCTAT CACCGCAACC
GGCATACCGG TCTATCTTTC AGGCATGGCG CGTGGGTTGC TGGGAGCAAA CCATCCGTTG
CAGATGCGTC ATCGGCGGCG CGAAGCGCTC CGCGAGGCGG ATCTGGTCAT TCTCGCCGGC
GTCCCATGCG ACTTCCGCCT CGACTATGGC AATCATATTC CGCGCCACAC CAGGATCATC
GCCGCCAATC GGAGTCGCAC CGATCTGACG CTGAACCGCC GTCCACAGAT TGCCGTCCTG
GGCGATCCGG CGCATTTCAT CCACCGCCTG TCGAACGCGG CATCCAACCA CAACCTGGAG
AGATGGCAGG AAACATTGCG TCAGCGTGAC GCCGGGCGCG AGGCAGAGAT TATCCGCCTG
TCCAATCAAC AAACAGCGTA TGTCAATCCG CTCTACCTCT GTCGAATGAT CAACGACGCA
CTGAGCGACA ACAGTGTCAT TGTCGCCGAT GGCGGCGATT TTGTGGCGAC GGCGTCGTAC
ATTGTTCGAC CGCGCCGTCC GTTGAGCTGG CTCGATCCGG GACCATTCGG CACGCTGGGG
GTCGGCGCAG GATTTGCGCT TGGCGCGAAA CTCTGCCGCC CTGATGCGGA TGTCTGGCTG
CTCTACGGTG ATGGCTCCGT TGGCTACAGT ATCGCTGAGT TCGACACGTT TACCCGTCAC
AACATCCCGG TGATCGCTGT CGTTGGGAAT GATGCCGGGT GGACGCAGAT CGCCCGTGAG
CAGGTGGAAC TGTTGCACGA TGATGTTGCA ACCAGGCTGG CGCATAGCGA CTATGATCAG
GTGGCAGCCG GGTTTGGCGC TGTCGGGCGC CGCATCGACG ATCCGGAACT GGTGGAGGAG
ACTCTGCAAC AGGCACAGCA ATCCGCCGCT CGCGGCAAAC CGGTCCTCGT CAATGTATTG
ATCGGTACAA CCGATTTTCG TAAGGGATCC TTGTCTATGT GA
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| Protein sequence | MHGGDLVAQA LQAHGVRFVF TLTGGHIAPV LVGCHQRGIR VIDTRHEATA VFAADAVARL
TGIPGVAVVT AGPGVTNTIT AIKNAQMAQS PLVLIGGATA TALRGRGALQ DIDQMTLMKS
LTKWRRSVRR VRDLIPTLEE AFFRARDGVP GPVFVELPID LLYDEQVVRQ WYGLKRIGRS
PAQWATWVSR SVWVHHLFAG AQQQAVVKPR PVPQREPDQR DIHAASLALA TAERPLLLAG
SQAVLDPASV DALARAITAT GIPVYLSGMA RGLLGANHPL QMRHRRREAL READLVILAG
VPCDFRLDYG NHIPRHTRII AANRSRTDLT LNRRPQIAVL GDPAHFIHRL SNAASNHNLE
RWQETLRQRD AGREAEIIRL SNQQTAYVNP LYLCRMINDA LSDNSVIVAD GGDFVATASY
IVRPRRPLSW LDPGPFGTLG VGAGFALGAK LCRPDADVWL LYGDGSVGYS IAEFDTFTRH
NIPVIAVVGN DAGWTQIARE QVELLHDDVA TRLAHSDYDQ VAAGFGAVGR RIDDPELVEE
TLQQAQQSAA RGKPVLVNVL IGTTDFRKGS LSM
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