| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_0937 |
|---|
| Symbol | |
|---|
| ID | 5207883 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus sp. RS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009523 |
|---|
| Strand | + |
|---|
| Start bp | 1155799 |
|---|
| End bp | 1157559 |
|---|
| Gene Length | 1761 bp |
|---|
| Protein Length | 586 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640594551 |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | YP_001275296 |
|---|
| Protein GI | 148655091 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAATAAGT CATCGTCGTC AATCCATACC CCTCGTTCTC TCAGACAGTT GTTCCAGTTG
CTCAGCGCCA GCGTCTGGGT CGCTGCGACG ATACTTGTGC TGCTTGCAGC TTGCGGCGCG
CCAGACCAGC CGGTTGCGAC CGGTGAAGCC TCGCCTACTT CTGCGCCCAC ATCAGCGCCC
CCGACTCCTA CCGCGCTGCC GCGTGGCGGA AATCTCACCA TCCGTCTGTC CGACGATAGT
GGCACATTGC AACCCTGGCA TCCGCGCACA CGCGGCGAAG AGCAGATCAT CGGGTTGATC
TACAGTGGTC TGATGCGCCT GGACGCAACC CTGGCGCCGC AACCGGACCT GGCGACGGGT
TGGGTAGCCT CAGCCGATGG ACGGGTCATC ACGTTCACCC TGCGCAGCGA TGCCGTCTGG
CACGATGGGC GTCCGGTCAC GGTTGATGAT GTTGTCTTTA CGCTCGATGC ATTGCGCGCA
CTGCCGCCGT CTACAGCGTT GCTCGCCGGG TTGCGGCGAA TTGTCGAAGT GACGGCGCCG
GAGAGCGATA CGATTGTCAT CCGCCTCGAT GAACGCTACG CACCCATCTT CAGCCTGCTT
ACAACGCCGG TGCTGCCGCG TCACCTGCTG ATCGGCAGAA ACCTGGCAGA ATTCAACGCC
TGGGATGTGC CGTTTGGCAG CGGTCCCTTC CGTTTTGAGC AGCGCGAGCC GGGCGTGGCA
ATCACACTGG CGGCGAATCA GGCATTCTAC CGGGGTGCGC CGCTCCTTGA TCGGGTGGTG
TTCGTCATTG CGCCCGATGC ACAGGTGGCA GCGTCGGCGT TACAGGATGA ACGTTTGCTG
CTGGCTGAAC TTCCCTGGAG CGTCGGCAGC GTCATAACCG AAACATCGCC GATGCTGCAA
TGGGGCGCAT ATGCTGAGAA CGGGTATTAT TTTCTCGCCT TCAACCTGCG TTCCGACCGA
ATCTTCAGCG ATCCGAGGCT GCGCGAGGCG CTGGCAGCGA CGATCGATCT GCCGCGCATT
GTGCAGGAGG TGACCGATGG GCAGGGGATG CTCATCGGCA GCAGCGCCGC GCCGGGTTCC
TGGGCAGATC TGACGCCGCC GCCAGCCGGA ACGGTCGATC TGGATCGCGC GCGGGCGCTG
CTGGACGAAG CCGGATGGCG TCTGCCGCCG GAAGGCGCCA TTCGCCAGCG CGACGGCGTG
CCGCTGACGG TGCAACTCTT CGTGCGCGCC GACGATCCGC GTCGGGTGCG CGCCGCCGAG
TTGATTGCCA GCGCTGCCGA ACAGATCGGG ATGGATATTG TGGTGCAGCC TGCCGATTTT
GCCACCGTCA TTCGCTCGAA ATATGCGCCG CCCTACGACT TCGATCTGCT GATCGGCAGT
TGGGTCAATG GCGTCGCCGA TCCGGATTTC GCCGACTACG CTTTCTACGA CCCGGACGAT
TTTGCGCTCT TTCATTCGAG TCAGATCAAC CAGGGGCTGG CGGATACACG TCCGACGCTC
AACTTTGTCG GGTTCAGCGA TCCGATCTAC GATAATCAGG CGGGTGCGGC ACGGCAGTTA
TACGATCTGA GCGAACGGGC GCAGGCGATC CAGCGTGCCC AGGAACGGGT GGCGCTTCTA
CGCCCATATC TGTTTCTCTG GGCGGATCGA ATAGCGGTAG TGTGCAATCC GCGGGTAAAA
ACGCCGGACG GACCGGTCAC CCTGATGACG CCCAACTATA TGTGGAATAT CGAGCGCTGG
TATGTCGAGG TGGAAGGTTG A
|
|---|
| Protein sequence | MNKSSSSIHT PRSLRQLFQL LSASVWVAAT ILVLLAACGA PDQPVATGEA SPTSAPTSAP
PTPTALPRGG NLTIRLSDDS GTLQPWHPRT RGEEQIIGLI YSGLMRLDAT LAPQPDLATG
WVASADGRVI TFTLRSDAVW HDGRPVTVDD VVFTLDALRA LPPSTALLAG LRRIVEVTAP
ESDTIVIRLD ERYAPIFSLL TTPVLPRHLL IGRNLAEFNA WDVPFGSGPF RFEQREPGVA
ITLAANQAFY RGAPLLDRVV FVIAPDAQVA ASALQDERLL LAELPWSVGS VITETSPMLQ
WGAYAENGYY FLAFNLRSDR IFSDPRLREA LAATIDLPRI VQEVTDGQGM LIGSSAAPGS
WADLTPPPAG TVDLDRARAL LDEAGWRLPP EGAIRQRDGV PLTVQLFVRA DDPRRVRAAE
LIASAAEQIG MDIVVQPADF ATVIRSKYAP PYDFDLLIGS WVNGVADPDF ADYAFYDPDD
FALFHSSQIN QGLADTRPTL NFVGFSDPIY DNQAGAARQL YDLSERAQAI QRAQERVALL
RPYLFLWADR IAVVCNPRVK TPDGPVTLMT PNYMWNIERW YVEVEG
|
|---|
| |