| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_0892 |
|---|
| Symbol | |
|---|
| ID | 5207838 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus sp. RS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009523 |
|---|
| Strand | + |
|---|
| Start bp | 1105992 |
|---|
| End bp | 1108082 |
|---|
| Gene Length | 2091 bp |
|---|
| Protein Length | 696 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640594507 |
|---|
| Product | WD-40 repeat-containing protein |
|---|
| Protein accession | YP_001275252 |
|---|
| Protein GI | 148655047 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2319] FOG: WD40 repeat |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.000103056 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 0 |
|---|
| Fosmid unclonability p-value | 0.0000205441 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | unclonable |
|---|
| |
Sequence |
| Gene sequence | ATGGAAATAT TGGAAATAGT ACTGGAAACA GTGCTGAGAG CATTGCGTGA CCCAATCTGG
CAAGGAGTTG GAGTTATAAT ATCAATATTG CTGATATTAG CACAAATTCA TCCCGAAAGA
GCTAAAGTTT TTATTTCTAC GAGTATTGTT ATTTTGATTG GGGTATTTAT TGCACAATTT
TTCGTAGGAG GAAATGGTAA AAATCTTGAT GAACCGAATG CTACTCCTCT GCCACGCACT
ATGATCGTCT CTAGCCCTGC CCCGATGTCG ACCAGCCCGC CCTACCCGCA ACCGGTGCAA
TCCATCAGCG TGGAGAACGC TGCGCGCGTC GCACAACTGG CACGCTGGGG GAGGGGGAGA
GTGGAAAATC TTGCCTTCTC GCCTGACGGG CGGCTGCTGG CGGTTGCTAC CGGCATCGGT
CTCTACCTCT ACGACATTCC GGCGCTGAGC GAGGTGCGCT TCATTGCCAC CGATGCGGCG
GTCTTCGACA TTGCCTTCTC CCCCGACGGA CGGCTGCTCG CCTCCGGGTC ACCGGATAAG
ACCGTCCGCC TGTGGGACGC GGCGAGCGGG CGGCTCGTGC GCACGCTAAA GGGGCATGGC
GACTCGGTGT TCAGCGTCGC CTTCGCCCCC GACGGACGGC TGCTCGCCTC CGGGTCACCG
GATAAGACCG TCCGGCTGTG GGACGTGGCG AGCGGGCAGC TCGTGCGCAC GCTGGAGGGG
CATACTGACT GGGTGTTCAG CGTCGCCTTC GCCCCCGACG GACGGCTGCT CGCCTCCGGG
TCACTGGATA AGACCGTCCG GCTGTGGGAC GCGGCGAGCG GGCAGCTCGT GCGTGCGCTG
GAGGGGCATA CCGACTCGGT GTTGAGCGTC GCCTTCGCCC CCGACGGACG GCTGCTCGCC
TCCGGGTCAC CGGATAAGAC CGTCCGCCTG TGGGACGCGG CGAGCGGGCA GCTCGTGCGC
ACGCTGGAAG GACATACCAA CTGGGTGCGC AGCGTCGCCT TCGCCCCCGA CGGGCGGCTG
CTCGCCTCCG GGTCATCGGA TAAGACCGTC CGGCTGTGGG ACGCGGCGAG CGGGCAGCTC
GTGCGCACGC TGGAAGGGCA TACCAGTGAT GTGAACAGCG TCGCCTTCTC CCCCGACGGG
CGGCTGCTCG CCTCCGCGTC TGCCGACGGC ACGATCCGGC TGCGGGACGC GGCGAGCGGG
CAGCGTGTCA GCGCGCTCGA AGGGCATACC GACATTGTGG CCGGCCTCTC CATATCACCT
GATGGACGGC TGCTTGCTTC CGCTGCGTGG GATAGCGTCA TCTCTTTGCA GGAGGCGGCA
ACCGGCCGGC GCGTGCGCGC GCTGGAAGGG CATACCGACG CGGTATTCAG CGTCGCGTTT
GCTCCCGACG GGCGGCTGCT TGCCTCCGGC GCTCGCGACA GCACCGTCCG GCTGTGGGAT
GCGGCGAGCG GGCAGCTCCT GCGCACGCTA AAGGGGCATG GCAGCTCGCA TGGCAGCTCG
GTGTGGAGCG TCGCGTTTTC TCCCGACGGG CGGCTACTCG CCTCCGGGTC GCTGGACAAC
ACCATCCGGC TGTGGGACGC GGCGAGCGGT CAGCTCGTGC GCACGCTGGA AGGGCATACC
AGTGATGTGA ACAGCGTCGC CTTTTCCCCC GACGGGCGGC TACTCGCCTC CGGCGCTCGC
GACAGCACCG TCCGGCTGTG GGACGTGGCG AGCGGGCAGC TCCTGCGCAC GCTGGAGGGG
CATACTGACT GGGTGAACAG CGTCGCCTTC TCCCCCGACG GACGGCTGCT CGCCTCCGGG
TCACCGGATA AGACCGTCCG CCTGTGGGAC GCGGCGAGCG GGCAGCTCGT GCGCACGCTG
GAAGGGCATA CTGGTAGGGT GCTCAGCGTC GCCTTCTCCC CCGACGGGCG GTTGCTCGCG
TCGGGAGGGC GTGATTGGAC TGTGCGGTTA TGGGACGTCC AGACCGGGCA GCTCGTGCGC
ACGCTGGAGG GGCATACGAA TTTGGTGAGC AGCGTCGTCT TCTCCCCCGA CGGGCGGCTG
CTTGCCTCCG GGTCGGATGA TGGCACCATC CGGCTGTGGG GCGTACCATG A
|
|---|
| Protein sequence | MEILEIVLET VLRALRDPIW QGVGVIISIL LILAQIHPER AKVFISTSIV ILIGVFIAQF
FVGGNGKNLD EPNATPLPRT MIVSSPAPMS TSPPYPQPVQ SISVENAARV AQLARWGRGR
VENLAFSPDG RLLAVATGIG LYLYDIPALS EVRFIATDAA VFDIAFSPDG RLLASGSPDK
TVRLWDAASG RLVRTLKGHG DSVFSVAFAP DGRLLASGSP DKTVRLWDVA SGQLVRTLEG
HTDWVFSVAF APDGRLLASG SLDKTVRLWD AASGQLVRAL EGHTDSVLSV AFAPDGRLLA
SGSPDKTVRL WDAASGQLVR TLEGHTNWVR SVAFAPDGRL LASGSSDKTV RLWDAASGQL
VRTLEGHTSD VNSVAFSPDG RLLASASADG TIRLRDAASG QRVSALEGHT DIVAGLSISP
DGRLLASAAW DSVISLQEAA TGRRVRALEG HTDAVFSVAF APDGRLLASG ARDSTVRLWD
AASGQLLRTL KGHGSSHGSS VWSVAFSPDG RLLASGSLDN TIRLWDAASG QLVRTLEGHT
SDVNSVAFSP DGRLLASGAR DSTVRLWDVA SGQLLRTLEG HTDWVNSVAF SPDGRLLASG
SPDKTVRLWD AASGQLVRTL EGHTGRVLSV AFSPDGRLLA SGGRDWTVRL WDVQTGQLVR
TLEGHTNLVS SVVFSPDGRL LASGSDDGTI RLWGVP
|
|---|
| |