Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RoseRS_0866 |
Symbol | |
ID | 5207812 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus sp. RS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009523 |
Strand | - |
Start bp | 1081386 |
End bp | 1082372 |
Gene Length | 987 bp |
Protein Length | 328 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 640594484 |
Product | uroporphyrinogen decarboxylase |
Protein accession | YP_001275229 |
Protein GI | 148655024 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG0407] Uroporphyrinogen-III decarboxylase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.00770341 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACGCGCC GTGAGCGGCT TGCCGCCGCT CTTCGTGGTG AGCCGGTTGA TCGCCCGCCG GTTGCGTTGT GGCGTCATTT CCCGGTCGAT GACCAGGATC CTGAGCAACT GGCGCAGTCG GTTGCAGCAT TTCAGGCGCA CTACGACTGG GATTTTGTGA AGTTCACGCC GTCCAGCAGT TTCTGCGTGG AAGATTGGGG ATGTCGTGCG GTGTACCGTG GGCGCCCCGA AGGCACCAGC GACTACGTGG CGCGTCCGGT CAGCGTTCCC GCCGACTGGC GTCGGATCGA GCCGCTCGAC CCATATGCGG GAGCGCTTGG CGCGCACCTG GCTGCGATCC GTCGCGCACG GGAACTGATC GATCCGGACG TTCCGCTGCT GGCAACGATC TTCAGTCCGA TCAGTCAGGC GAAGAACCTG ATCGGCGACG GGATGGAGAT CGTCCATCTC CGGCGACACC GATCCGATCT GTTCCACGCA CTTGAGGCGA TCACCGAAAC CACCATTCGC TTCGTTCAAG CGGCGCTGGC AGCCGGCGCC GATGGCATTT TTTACGCCAT GCAACGCTGC ACGGCGGATG TCATCAGCGA AGCCGAGTAC CGCGACGTCT GCAGCCCGCT CGATCTCCGC ATCCTCGAAG CGGTCCACGC TGCACAGAGA GAGACAACCT TCATTCTGCT CCACCTGCAC GGGCTGTATT CCTACTTCGA CATCGCAGCA GAATACCCGG CGCAGGCGCT CAACTGGCAC GACCGGGACA CCGGACCGGA CCTCGCGGAA GGAGCGCGTC GTTTTCCGGG CATGGTCGTC GGCGGGCTGA GTCAGCGTGA CATTGTCGAG GGTACGCCAG CGACAATTCA GACGCTGGCG CGACAGGCTA TCGATGCCAT GGGTGGGCGG CGCGTGTGTC TCTCAACCGG TTGCGTTATG CCGACAACCG CGCCATGGGG CAACATTCGA GCGTTGCGGG CGGCTGTGGA TCGATGA
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Protein sequence | MTRRERLAAA LRGEPVDRPP VALWRHFPVD DQDPEQLAQS VAAFQAHYDW DFVKFTPSSS FCVEDWGCRA VYRGRPEGTS DYVARPVSVP ADWRRIEPLD PYAGALGAHL AAIRRARELI DPDVPLLATI FSPISQAKNL IGDGMEIVHL RRHRSDLFHA LEAITETTIR FVQAALAAGA DGIFYAMQRC TADVISEAEY RDVCSPLDLR ILEAVHAAQR ETTFILLHLH GLYSYFDIAA EYPAQALNWH DRDTGPDLAE GARRFPGMVV GGLSQRDIVE GTPATIQTLA RQAIDAMGGR RVCLSTGCVM PTTAPWGNIR ALRAAVDR
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