| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_0768 |
|---|
| Symbol | |
|---|
| ID | 5207707 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus sp. RS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009523 |
|---|
| Strand | + |
|---|
| Start bp | 948409 |
|---|
| End bp | 950319 |
|---|
| Gene Length | 1911 bp |
|---|
| Protein Length | 636 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640594382 |
|---|
| Product | VanW family protein |
|---|
| Protein accession | YP_001275134 |
|---|
| Protein GI | 148654929 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG2720] Uncharacterized vancomycin resistance protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.865985 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.533317 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGGAGA AGTACTATCA GGAGTATGGT CCTATCCGGC GGCGCAAGGG CGAGGGGCGG
CTCCTGATCG ATGAGCCGCC GCCTGAGTTG CCGCCTGAAC CATCAGAACC CAGGTTGCCG
CGACGCACAC CGCCGGTGCG TCCCCGTCGT GCGCCGGTGC TGGGTGTTCT GCTGATCATT
GCTGCGCTCG GCGTAGCGCT CTTTTTCGCG CAGCCATTTA TCACCGATGT GCTTGCCGCC
GACCGTGCCA TGCCCGGTGT CAGCATTCGA GGTATGCCGG TTGGCGGTCT GTCGCGTGAA
GAGATCCGAA CCGCACTGGT ATCGCACTAT GCACCGTTCA TCGAAGCGCC GCTGACGCTG
GTGTTTGAAG GGCGATCCTG GCAACCTTCA CTCGACGATC TCGGTGTTCA ATTCGATCCC
GATCAGGCGG CTTCGATGGC GCTTGGCGTT GGACGCACCG GCAATCCGCT GCGTCGGATC
GAAGAACTGT GGGAACTGCG GCAGAACGGC GGGGTCGATA TTGCGCCGCG TCTACAGGTG
GACGCGGCGC GGGTACAGCA GTACCTGATC GGTCTCGCTG GAGAGATCGA CCGCCCGCCG
CGCGATGCAG CGCTCAGTAT TGCTGCCGGC AAGGTGCTGC CGACCGCTGC CCAACCCGGG
CGCCAACTCC TGACGGATGC CACGGCGCTC GATATTTTGC GCGCATTGCA ATCGCTCGAA
CCACAGACGG TCACGCTCCG TACCCGCATC CTCGAGCCGA CGCTGGCGGA TGAAGATATT
GCCGCTGCGG TTGTCGATGC TGAATTGCTG CTGAGCCGAC CGCTCGAACT CCAGCAGGGG
GAACGGCGCT GGATATGGGA GCCGGATCGG ATTGCGGAGA TGCTGACCAT CAGCGTCACC
GACGGTCGCA TGTTCGTCGA TATCGACCAG GCGCGGCTGG AACGTGCGGT TGACCGTCTG
GCGCAATTCG TCGACTCAGC GAGCGCCGAG CCGCGGGTCG CCTTTCGCAA TGGGCGTCTT
CAGATCGTGG CGCCGGGGCG CGATGGCTTG CGCCTCAAGA AATCCGAAAC CGTCGAAGCG
ATCCGTCTGG CGCTACGCAC ACAGGATCAC ATTGTCGAAC TCCCGGTCGA AACGATCCGA
CCGCAGATTA CCGCAGAAAC ACTGCCAACC CTCGGCATTG TCGAGTTGGT GGCGGAAGGA
AAATCGAGTT TTGCCGGTTC TGCCGGGTAT CGTGTGACGA ATATCCAGGC TGGCGCTGCA
CGAATGGACG GAGTGCTCAT CCCGCCCGGC GCCGAGTTCT CCTTCAACAC GCAACTTGGC
GCGGTCGATG CGGAGCATGG CTTTGTCCAG GGGTATGCAG TTATCGGTAA TCGCACCCAA
CTCGAGTGGG GCGGCGGCGT GTGCCAGGTG TCAACTACAG TGTTTCGCGC CGCATTCTGG
GCAGGTTTAC CGATCACCGA ACGCCATGCC CACCCATTCT ATATTTCCTG GTACGATGCC
TTCAGTTTCC CCGACCAGGC AGCGCCTGGC ATGGATGCGA CGATCTACAC CGGAGTGCAG
GATCTCAGAT TCATCAATGA CACCGGACAC TGGTTGCTCA TGGAAGCCGT CGCCGATACG
AGCGCACAGG TGCTGAGTGT GCGTCTCTAC GGCACGCGAC CGGATCGACG TGTGGCGGTG
GTGGGACCGG AGATCACCAA CGTTGTGCCT CCGCCAGCGC AGGCAGTGTA CGTGAATGAT
CCTGGTCTGC CCTTCGGAAC CGTGCGTCAG ACTGATCGGG CGCGGCGCGG GATGGATATC
AAGGTCTACC GGGTGATCAC CGAGCAGGGG GTGCAGAAGA CGCCCGAACT CTTCTTCACC
CGCTTCAAAG CCTGGCCCGA TGTCTTTGTG CGCGGAACCA GGCGTCCATA G
|
|---|
| Protein sequence | MSEKYYQEYG PIRRRKGEGR LLIDEPPPEL PPEPSEPRLP RRTPPVRPRR APVLGVLLII
AALGVALFFA QPFITDVLAA DRAMPGVSIR GMPVGGLSRE EIRTALVSHY APFIEAPLTL
VFEGRSWQPS LDDLGVQFDP DQAASMALGV GRTGNPLRRI EELWELRQNG GVDIAPRLQV
DAARVQQYLI GLAGEIDRPP RDAALSIAAG KVLPTAAQPG RQLLTDATAL DILRALQSLE
PQTVTLRTRI LEPTLADEDI AAAVVDAELL LSRPLELQQG ERRWIWEPDR IAEMLTISVT
DGRMFVDIDQ ARLERAVDRL AQFVDSASAE PRVAFRNGRL QIVAPGRDGL RLKKSETVEA
IRLALRTQDH IVELPVETIR PQITAETLPT LGIVELVAEG KSSFAGSAGY RVTNIQAGAA
RMDGVLIPPG AEFSFNTQLG AVDAEHGFVQ GYAVIGNRTQ LEWGGGVCQV STTVFRAAFW
AGLPITERHA HPFYISWYDA FSFPDQAAPG MDATIYTGVQ DLRFINDTGH WLLMEAVADT
SAQVLSVRLY GTRPDRRVAV VGPEITNVVP PPAQAVYVND PGLPFGTVRQ TDRARRGMDI
KVYRVITEQG VQKTPELFFT RFKAWPDVFV RGTRRP
|
|---|
| |