| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_0581 |
|---|
| Symbol | upp |
|---|
| ID | 5207519 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus sp. RS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009523 |
|---|
| Strand | - |
|---|
| Start bp | 719907 |
|---|
| End bp | 720533 |
|---|
| Gene Length | 627 bp |
|---|
| Protein Length | 208 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640594200 |
|---|
| Product | uracil phosphoribosyltransferase |
|---|
| Protein accession | YP_001274953 |
|---|
| Protein GI | 148654748 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0035] Uracil phosphoribosyltransferase |
|---|
| TIGRFAM ID | [TIGR01091] uracil phosphoribosyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.121633 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCACAGG TGATGATCTC TCAGCATCCG CTCGTCCAGC ACAAACTGAC GCTGCTGCGT
CGGGCGACGA CCGAACCGAA GAAGTTTCGT GAACTGGTGC GCGAACTGTC GCAATTTCTG
TTGTACGAAG CCACGCTTGA TCTCCCGCTC CAGGAACGGA TCGTTGACAC GCCGCTCGCA
CCCTACCACG GTCATCGGAT CGCCGAGCGC GTCGGTCTGG TGCCGATTCT GCGCGCCGGG
CTGGGCATGG TCGATCCGAT CCTCGATCTC ATACCGACTG CCCACGTCTG GCATCTGGGT
CTCTACCGCG ACCACGCGAC GCTCAAACCG GTCACCTACT ACAACAAACT TCCTCCAGAA
GTGGATGTCG ATCTCTGCCT GGTGCTCGAT CCTATGCTTG CCACCGGCGG CTCGGCGGTG
GCGGCGGTGA CCGTGCTGAA AGAGTGGGGC GCGAGCCGGA TTAAGTTCCT CGGTTTGATC
GCTGCGCCAG AAGGGGTGCA GGCATTGCAC CAGGAGCACC CCGATGTGCC GATCCATCTG
GCGGCGATCG ACGATTGTCT GAACGATCAC GGATATATTG TCCCCGGTCT GGGGGATGCA
GGTGATCGCC TGTTTGGGAC GGGTTAA
|
|---|
| Protein sequence | MAQVMISQHP LVQHKLTLLR RATTEPKKFR ELVRELSQFL LYEATLDLPL QERIVDTPLA
PYHGHRIAER VGLVPILRAG LGMVDPILDL IPTAHVWHLG LYRDHATLKP VTYYNKLPPE
VDVDLCLVLD PMLATGGSAV AAVTVLKEWG ASRIKFLGLI AAPEGVQALH QEHPDVPIHL
AAIDDCLNDH GYIVPGLGDA GDRLFGTG
|
|---|
| |