| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_0564 |
|---|
| Symbol | |
|---|
| ID | 5207502 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus sp. RS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009523 |
|---|
| Strand | + |
|---|
| Start bp | 700896 |
|---|
| End bp | 701900 |
|---|
| Gene Length | 1005 bp |
|---|
| Protein Length | 334 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640594183 |
|---|
| Product | cobalamin biosynthesis protein CobD |
|---|
| Protein accession | YP_001274936 |
|---|
| Protein GI | 148654731 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG1270] Cobalamin biosynthesis protein CobD/CbiB |
|---|
| TIGRFAM ID | [TIGR00380] cobalamin biosynthesis protein CobD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTATCTAT CACACCGAAT ATCACACCGA AGTCAAACGC TCCTGATTGC GCTGATTGCT
GATGCGCTGC TTGGTGATCC GCCGAATGCC TGGCATCCGG TGGCGCTCAT GGGGCGCTGG
ATGCATCTGG GTGAGCGGTT TGCCCCCCAG GGCGCAACGG CGCGTCTGCT GTGGGGTGGA
ATGTGGCTGA CGGCGGGCGC GGCGGCAACC GGATCGGTCG TGGCGCTGCT GCCGGATCAT
CCGGTCGTGC GGGGACTGGC GGCCTCGACC CTGATGGCAT ACCGCGGGTT GGATCGGGCG
GTCGGCGAGG TGCAAACCGC GCTGGAGCGC GGCGATCTGG CAGAAGCGCG GCGTCTGCTG
GGATGGCACC TGGTGAGCCG TCCAACTGCC GATCTTCGCG CCGATGAAGT AGCAGGCGCG
GCGATTGAGT CGCTGGCGGA AAACTTGAGC GATAGTCTGG TTGCACCGGC GCTGGCGCTC
CTCGTCGGCG GGTTACCCGC CATCGCCGTC TATCGCCTGT CGAACACGGC TGATGCGATG
TGGGGGTATC GGAACGAGCG CTACGAATAC CTGGGCAAGA CAGCGGCACG GCTCGATGAC
GCACTCAACC TGCTGCCAGC GCGTCTCACG GCGGCGCTCA TTGCTGCGGC TGCGCAGATT
GTGTGTGGAC GGGGAATGAT CGCGTGGCAG ATTGCACGCC GTGACGCCGG GCGTACTGCG
TCGCCGAATG CAGGGTGGCC TATGGCGGCG ATGGCGGGGG CGCTCGACAC GACCCTTACC
AAACGCGGAC ACTACACCCT CGGAAGCGGA TCCCGCCTGC CCGACGCTGC CATGATCGGC
GAGGCGCGCC GGATTGCGCG CGTCGTGCCG CTGCTGCTGG CGGGCGGCGT TCTGCTAGTA
ACGTTCAGCG TTCAACGTTA CGTTCAACGT TATAGAGTTA TATCGCAGTT CTCACAGAGG
AAGGCGTCAG CATGTCCAAC TCCGATCACA CCGCACTTCT CCTGA
|
|---|
| Protein sequence | MYLSHRISHR SQTLLIALIA DALLGDPPNA WHPVALMGRW MHLGERFAPQ GATARLLWGG
MWLTAGAAAT GSVVALLPDH PVVRGLAAST LMAYRGLDRA VGEVQTALER GDLAEARRLL
GWHLVSRPTA DLRADEVAGA AIESLAENLS DSLVAPALAL LVGGLPAIAV YRLSNTADAM
WGYRNERYEY LGKTAARLDD ALNLLPARLT AALIAAAAQI VCGRGMIAWQ IARRDAGRTA
SPNAGWPMAA MAGALDTTLT KRGHYTLGSG SRLPDAAMIG EARRIARVVP LLLAGGVLLV
TFSVQRYVQR YRVISQFSQR KASACPTPIT PHFS
|
|---|
| |