| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_0335 |
|---|
| Symbol | |
|---|
| ID | 5207270 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus sp. RS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009523 |
|---|
| Strand | + |
|---|
| Start bp | 429701 |
|---|
| End bp | 430834 |
|---|
| Gene Length | 1134 bp |
|---|
| Protein Length | 377 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640593961 |
|---|
| Product | patatin |
|---|
| Protein accession | YP_001274717 |
|---|
| Protein GI | 148654512 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1752] Predicted esterase of the alpha-beta hydrolase superfamily |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.0172701 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAG CGCTCGTCCT TTCCGGCGGC GGCGGTCGTG GCGCCTACCA CGTCGGCGTG
ATCGAGGCGC TCGTCGAACG TGGCTGGATG CAGGATGGCG TCGGACCGGA TATCATTGCC
GGGACCTCGA TCGGCGCGAT CAATGCTGCG GCGCTGGCGT CTGGTTTGAC CGTCGCACAA
CTGAAAGCGC GCTGGCTCGA TATGCACACC GAGGATGTGC ATCGACTATC AGGCGATCTG
CCAGCGGTCA GTCGACCGCT CGTCCGTTTT CTGATGCGCA GCGTCTTGAC CTCAGAAGCG
CACGGCGGCG CGAGTGTCGT TTTGCCGCCT GAAGAGCGCA GCATGAGTGC CCAGGGATTG
CTCGAGCGCA TCGGTCAGGT ATTCCGCACG CGCCCATTTC GCAGTCTGCT CGATACTGCT
CCCTGGCGTC ACACGCTGAG TCGCTGGATG GACTTTGACC GGATCAACGC GCCGGATGCG
CCTGCACTGC TGCTGACTGC GACCGATCTC CAGACCGGCG ACCTGCGGGT GTTTTGCAAT
CGACCGCTCC GTGACCACCC GGCTGACCGG ATCACTCTTG ACCATCTCAT GGCGTCGTCG
AGCATTCCGA CCGTCTATCC CTGGACCGAG ATCGATGGTC GCAAGTACTG GGACGGGGCG
GTGCTGGCGA ATACTCCGTT AGGACCGGTG ATCGATCTTG CGGCGGGCGA TGATGTCGAG
ATTGTCGTCG TTATGATGAC GCCATGGGAT GTCGCGCCGG AAGCGATGCG TCAGCAGTTG
CAAAGCGTGC CGGAAGACCT GGTGCAGGCA TTATCGTTGA CGCTGGATTG GGCGCTGCTG
GCATCGTATC GCGCGGCTAT CAAGATGCTG CGCGCATACA ATCGGCTGGC AGAGGCGGCG
CGAAAACTTG AGCGGGCTGC ACAGCAAACC GGCGACCCGG CTCTGACTCT GGAAGGAAAC
ATTCCCCGCA TCATCGCCGA GCCGCTGGTC ATTGCGCCAC AGCAGTTGAT GCCGCTGGAA
TGGATTATCG ATTACGAAGA GCGCAATCAT CTGGCATTGT TCGAGATGGG GCGGAATGAC
GCCCTGCGCG CACTCGACAC GCGCCTGCTC AATCGGTTGC TCGACCAGCC ATGA
|
|---|
| Protein sequence | MKKALVLSGG GGRGAYHVGV IEALVERGWM QDGVGPDIIA GTSIGAINAA ALASGLTVAQ
LKARWLDMHT EDVHRLSGDL PAVSRPLVRF LMRSVLTSEA HGGASVVLPP EERSMSAQGL
LERIGQVFRT RPFRSLLDTA PWRHTLSRWM DFDRINAPDA PALLLTATDL QTGDLRVFCN
RPLRDHPADR ITLDHLMASS SIPTVYPWTE IDGRKYWDGA VLANTPLGPV IDLAAGDDVE
IVVVMMTPWD VAPEAMRQQL QSVPEDLVQA LSLTLDWALL ASYRAAIKML RAYNRLAEAA
RKLERAAQQT GDPALTLEGN IPRIIAEPLV IAPQQLMPLE WIIDYEERNH LALFEMGRND
ALRALDTRLL NRLLDQP
|
|---|
| |