| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_0287 |
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| Symbol | |
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| ID | 5207222 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus sp. RS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009523 |
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| Strand | - |
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| Start bp | 366008 |
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| End bp | 367633 |
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| Gene Length | 1626 bp |
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| Protein Length | 541 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640593913 |
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| Product | RpoD family RNA polymerase sigma factor |
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| Protein accession | YP_001274669 |
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| Protein GI | 148654464 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.332062 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.00728099 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGAAAACG CAAACGAGTC ACTTCTGGAC GATGATCTGA TGCTGGACGA TCTGGATGAT
GAGCTGGCTG GCGCTTCACG GGAACCCGAA GAAGAGCCGC AAACCATCAC CAGCCTGAGC
GATCTGCTGG CAATAGGCAA GCAACGCGGG TTCGTCACCG AGGGCGAGAT TGCGCAACTC
CTGGCAAATA GCGACGCCGA TAGCGACCGT CTGGCGGAGA TTCAGCAGGC GCTCCAGGCA
GCCGGCATTG CAACCCGCGA CGAAATGATC ACCGGCGGTG CGGAGATCGA TATCCCCTTC
GAGGAAGAGG GTGATTTCGA TGATCTGAAC GTTGAAGGCA TCAGTGTTAA TGATACGGTG
CGGATGTACC TGCGCGAGAT CGGGCGGGTG CCGCTGCTCA ATGCGCGCCA GGAGATCCTG
CTTGCACAGA AGATCGAGAT CGGCGAATAC CTCGAGTCGT ACCGGACGCA ACTGGCTGCT
GACTGGCGCC CGGAGCAGGT CGACGTGATC GGCGCGCAAA TGTATCAGCG GTTGCAAAAA
ACATGGCCCG TTGTTGCGGA TGCCGTTCGG CTGCTCTACG AGATTGTCGA GCAACCGTTG
CCCGATCCGT TGACTCCGGG ATGCCTGCGC GAAGTTTCCG CCATCCAGGA GCGCATGACC
TTCGAGCAGC GCCAGTCGTT CGAAAAACGG CGCAATGAAT TGATCAAACA GCACCGCATG
ACGGCGGAAC AGTTTGATCA GACGTTTGCG CAGGCGACGA TCATCTTCTC GCTCTTACCC
CATGTGGTGC AGCAACGGTT GATCGCCTTC ACCGACTGGC CCACGGTCGA GGACGTGCAG
CAGGCGTGCG CTGCGGCGCG CGATCAGCTC TGGCGCGACT GGAATCTCGC CATCGATCAG
GGGAAAACCG CACGCGAGGA TCTGACTCAG GCAAACCTGC GCCTGGTCGT ATCAGTGGCA
AAGAAGTACA TTGGTCGCGG GTTGCAACTC CTCGACCTGA TTCAGGAGGG GAACGTCGGG
CTGATCCGCG CGGTTGAAAA ATTCGACTAT CGTAAAGGGT TCAAGTTCTC GACGTATGCA
ACCTGGTGGA TCCGTCAGGC GATCACCCGC GCGATTGCCG ATCAGGCGCG CACCATCCGC
ATCCCGGTGC ATATGGTCGA GACAATCAAC CGCCTGATGC GCGAAAGTCG CCGGATGTTG
CAGGAGTTGG GGCGCGAACC GACCGATGAG GAATTGTCAC GCGCGCTGGG CATTCCGGTC
GATAAGGTGC GTTCGATCCG CAAAACATCG CTCGAACCCG TCTCGCTTGA AACACCGGTC
GGACAGGAAG AAGACAGTCA GCTCGGCGAT TTTATCGAAG ACTCGAAAGT GCTCGCTCCT
TCCGATGCCG CCAGTCATCA GATGCTACGC GAGCAGGTCG AGCAGGTGCT GAATCAACTC
ACCGAGCGTG AACGACGGGT GCTCCAGTTG CGTTTCGGTC TCGAAGATGG TCACAGTCGC
ACGCTTGAAG AAGTTGGCAA GGAGTTCGGC GTTACACGCG AGCGCATTCG CCAGATCGAG
GTAAAGGCGT TGCGGAAACT GCGTCATCCG CGGCTTGGCA AGAAACTGCG CGATTATCTT
GAGTAG
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| Protein sequence | MENANESLLD DDLMLDDLDD ELAGASREPE EEPQTITSLS DLLAIGKQRG FVTEGEIAQL
LANSDADSDR LAEIQQALQA AGIATRDEMI TGGAEIDIPF EEEGDFDDLN VEGISVNDTV
RMYLREIGRV PLLNARQEIL LAQKIEIGEY LESYRTQLAA DWRPEQVDVI GAQMYQRLQK
TWPVVADAVR LLYEIVEQPL PDPLTPGCLR EVSAIQERMT FEQRQSFEKR RNELIKQHRM
TAEQFDQTFA QATIIFSLLP HVVQQRLIAF TDWPTVEDVQ QACAAARDQL WRDWNLAIDQ
GKTAREDLTQ ANLRLVVSVA KKYIGRGLQL LDLIQEGNVG LIRAVEKFDY RKGFKFSTYA
TWWIRQAITR AIADQARTIR IPVHMVETIN RLMRESRRML QELGREPTDE ELSRALGIPV
DKVRSIRKTS LEPVSLETPV GQEEDSQLGD FIEDSKVLAP SDAASHQMLR EQVEQVLNQL
TERERRVLQL RFGLEDGHSR TLEEVGKEFG VTRERIRQIE VKALRKLRHP RLGKKLRDYL
E
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