| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_0253 |
|---|
| Symbol | |
|---|
| ID | 5207188 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus sp. RS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009523 |
|---|
| Strand | - |
|---|
| Start bp | 323443 |
|---|
| End bp | 324372 |
|---|
| Gene Length | 930 bp |
|---|
| Protein Length | 309 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640593883 |
|---|
| Product | malate dehydrogenase |
|---|
| Protein accession | YP_001274639 |
|---|
| Protein GI | 148654434 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0039] Malate/lactate dehydrogenases |
|---|
| TIGRFAM ID | [TIGR01763] malate dehydrogenase, NAD-dependent |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.041825 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.0135962 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGACCGA AAATCTCGAT CATTGGCGCG GGTTTCGTCG GTTCAACCGC CGCTCACTGG
ATCGCATCCA AAGAACTGGG CGATGTTGTG CTGGTCGATA TTATCGAGGG TGTGCCGCAG
GGAAAAGGGC TTGATCTGCT GCAGGCTGGA CCGATCGAAG GGTTTGACGT GAAGATCACC
GGCACGAACG ATTACAGTGC GACTGCCGGT TCCGACATTA TTGTTGTGAC GTCGGGCGCA
CCGCGCAAGC CCGGCATGAG CCGCGAAGAT CTCATCCGGG TCAATGCCGA TATTACGCGC
GACTGTATCT CCAAAGCGGC GCCGCTTTCG CCCAACGCGA TCATCATTAT GGTGAACAAT
CCGCTCGACA CAATGACCTA CCTGGCGAAG CAGGTCAGCG GCTTCCCGAA GAATCGGGTC
GTGGGGCAGG CTGGCGTGCT GGACACGGCG CGCTATCGGA CATTCATCGC CATGGAGGCG
GGCGTATCGG TCGAAGACAT CCAGGCAATG CTGATGGGCG GTCACGGCGA TGAGATGGTG
CCGTTGCCGC GCTTCACAAC CATCAGCGGC ATACCGGTGA CCGAGTTCAT CAGCAAGGAG
CGGCTCGATG CCATTGTTGA TCGCACCCGC AAAGGCGGCG GTGAAATCGT CAATCTGCTC
AAAACCGGCA GCGCCTACTA CGCTCCGAGC GCTGCAACCG TGCAGATGGT CGAAGCCATT
CTGCGCGACA AGAAGCGTGT GCTACCCTGC TCCTGCTACC TGGAAGGGGA GTATGGCTTG
AACGACATCT ACTTCGGCGT GCCGTGCGTG CTCGGTGCGG GCGGTGTGGA GCGCGTGCTG
GAACTGCCGT TGAACGATGA GGAGATGGCG CTGGTGAAGA AGAGCGCCGA AGCGGTGAGT
TCGTCGATTG CCGCGCTCAA GGCAATGTGA
|
|---|
| Protein sequence | MRPKISIIGA GFVGSTAAHW IASKELGDVV LVDIIEGVPQ GKGLDLLQAG PIEGFDVKIT
GTNDYSATAG SDIIVVTSGA PRKPGMSRED LIRVNADITR DCISKAAPLS PNAIIIMVNN
PLDTMTYLAK QVSGFPKNRV VGQAGVLDTA RYRTFIAMEA GVSVEDIQAM LMGGHGDEMV
PLPRFTTISG IPVTEFISKE RLDAIVDRTR KGGGEIVNLL KTGSAYYAPS AATVQMVEAI
LRDKKRVLPC SCYLEGEYGL NDIYFGVPCV LGAGGVERVL ELPLNDEEMA LVKKSAEAVS
SSIAALKAM
|
|---|
| |