Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RoseRS_0156 |
Symbol | |
ID | 5207089 |
Type | |
Is gene spliced | No |
Is pseudo gene | Yes |
Organism name | Roseiflexus sp. RS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009523 |
Strand | + |
Start bp | 200194 |
End bp | 202012 |
Gene Length | 1819 bp |
Protein Length | |
Translation table | |
GC content | 52% |
IMG OID | 640726302 |
Product | |
Protein accession | |
Protein GI | |
COG category | [V] Defense mechanisms |
COG ID | [COG1136] ABC-type antimicrobial peptide transport system, ATPase component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.00432374 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.387266 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAACCGC TCATTGAAGT TCACGATGTC GTCAAAATCT ATCGGATGGG GGATGTAGAG GTGCATGCGC TGCGCGGCGT GTCACTCGCC ATCGATGAAG GCGAGATGGT CGCTATCATG GGTCCGTCCG GCAGCGGCAA AAGCACCCTG ATGAATAGAC ATCATCAAGA TTTAGTGATA TACTATTTTT GTACAATCTG AAAATGGAGA AAAACGATGT GTAAGTATCG ATCCATTATC GAAAATCCGG AGAAATTACG CTCTATGACC GGACTGACCG TTGAAGAGTT CCACGCGCTG GTTCCGATCT TCCACGCCGC ATTTGAAGCG TATATGAAAC GTCGCACGAT TGATGGCCGC GTCCGATATT GTCGTCGCTA CGTCTCGTAT GCAAACTCGC CGCTTCCGAC AACAGAAGAT AAATTGCTCT TTATTTTGAC CTACTTAAAA CAAAACCCAA CGCAAGTGAT GCACGGACAC CTCTTTCAAA TGAGCCAATC AAACGTAAGC AAATGGGTGC ATCTTTTGCA CGGAGCGCTG AACTATGCGC TTTCACAGCA AAATCTCCTG CCTGCGCGCA CTGCCGACGA CCTGGCGAGG CGATTGCAGG AAGAACCGTC GTGTGAAGAA CCGTCGTGTG AAGAACCGTC GTGTGAAGAA CCGTCGTGTG AAGAACCGTC GTGTGAAGAA CCGTCGTGTG AAGAACCGTC GTGTGAAGAA CCGTCGCATG CGACAAAAGC GCCCCCCTTT TTATCCATGA CGGCGTAGAA CGTCCCATTC GCCGTCCAAG CGACAAAGTC GACCGGGAGT TGTATTACAG CGGTAAGAAG AAACGACATA CGCTTAAGAA CGTTCTCATC ATTGATGAGT TTGGCTCTAT TCACTTTTTG AGTGACACCT ACGAAGGAAG GGTCCACGAT AAATGTATTG CGGATGAAGC GGGATACACC CTTCCAAACG CGAGCATTCT CTATCAAGAC GCCGGATTTC AAGGATTTAC CCTGCCTGGC GTCCAGATTA TGCAGCCAAA GAAGAAGCCG CGCAATGGAA CCCTCACGCC GCAGGAAAAG GAGGAAAACC GGCGTATCTC ATCCGTTCGC GTTCGTATTG AACATGTTAT CGGCGATATC AAGCGGTATC GAATCATTCA CGACATTATC CGCTTCAGTT GTTCCGAATT TCGGGATATG GTCATGGAAA CATGTTGCGG GCTGCATAAC TTCCGAATTT GGCTGAAACG CAAAAAGCAG TCCAAAAATC AAAACGAATC TTGATGAAGT CTAATATCCT GGGATGTCTC GATCAACCGA CGAGCGGAAC CTACCTGCTC GACGGTGTTG ATGTGGGCAG CCTGAACGAT GACGAACTGG CTGCGATCCG CAACCAGAAG ATCGGATTTG TCTTCCAGCA GTATATGCTG CTGCCGCGAA CCACTGCGTT GCGCAATGTC GAACTGCCGC TGCTCTACAG CCCCGGCAAC GGGCTTGATC GCACGGCGCG CGCACGTGCG GCGCTTGAGG CGGTCGGTAT GGGCGACCGC ATGCACCACA AGCCGAATGA ACTCTCCGGC GGACAGCAAC AGCGGGTTGC GATTGCGCGC GCGCTGGTCA ACAATCCGCG CATTATTCTG GCGGATGAGC CGACCGGTGC GCTGGACACG AAGACCGGCG AGGAGATCAT GGGGATTTTC GAGCGGTTGA ACCGCGAGCG TGGCATTACC GTGATCCTGG TGACTCACGA GCAAGATGTT GCCCGTCACG CCGAACGGAT CATTCATATG CGTGACGGGC AGATCGCCGA TGTTACAGCA CGCGTGTGA
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Protein sequence | |
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