| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_0003 |
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| Symbol | |
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| ID | 5206936 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus sp. RS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009523 |
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| Strand | + |
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| Start bp | 3243 |
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| End bp | 3956 |
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| Gene Length | 714 bp |
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| Protein Length | 237 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640593637 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_001274396 |
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| Protein GI | 148654191 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.419442 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 0 |
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| Fosmid unclonability p-value | 0.00000816972 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | unclonable |
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Sequence |
| Gene sequence | ATGCTCGAAG GAAAGATTGC AATTGTAACC GGCGGCGCCG GGGCGCTTGG CAGCGCCGTG
GTGCAGACGT TGCTCGACAC TGGCGCGACG GTGTGGGTTC CATACATTAA TCCGTCTGAA
TTCGACCATC TGCGTCAGCG TCTCGGCGCC CCCGCCAGTA CGCGACTGGA TGGCAGACTG
CTGGACCTGA CCGACGAAAC AGCGGTGCAA CAGGCGTATG CTCAGGTTGC CAGCGCCCAC
GGCGGCATTG ATATCCTGGT CAATGTTGCA GGAGGGTTTG CTGGCGGTGA ACCGGTGCAC
CGCACATCCT GGGCGCTCTG GCAGCAGCAA CTGGACATCA ATCTCAAAAC GGCGGTTATC
TCATGCGCTG CAGCGGTGCC GCATATGCTG GCGCGTGGCG GTGGAGCGAT TGTCAACGTC
AGCAGTCGCA CCGCAACGCA AAGCGCCAGG AATGTCGCTG CGTATGGCGC TGCCAAACGC
GCGGTTCTCC AGTTGACCGA GGCGCTCGCT GCTGAACTGC GCGACTCGAA CATCACTGCG
AATGCCATTC TGCCCAGCGT GATCGACACC CCCGCCAATC GCGCCGCCGA TCCCAAAGCT
GACCATAGTC GCTGGGTCGC GCCAGAGGCG ATTGCACGCG TCGTACTGTT CCTCGTCGGT
CCCGATGCGC GGATCATCAG TGGCGCTGCG ATCCCGGTGT ATGGGAGAGC ATAA
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| Protein sequence | MLEGKIAIVT GGAGALGSAV VQTLLDTGAT VWVPYINPSE FDHLRQRLGA PASTRLDGRL
LDLTDETAVQ QAYAQVASAH GGIDILVNVA GGFAGGEPVH RTSWALWQQQ LDINLKTAVI
SCAAAVPHML ARGGGAIVNV SSRTATQSAR NVAAYGAAKR AVLQLTEALA AELRDSNITA
NAILPSVIDT PANRAADPKA DHSRWVAPEA IARVVLFLVG PDARIISGAA IPVYGRA
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