| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lreu_1652 |
|---|
| Symbol | |
|---|
| ID | 5189348 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Lactobacillus reuteri DSM 20016 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009513 |
|---|
| Strand | + |
|---|
| Start bp | 1713463 |
|---|
| End bp | 1714110 |
|---|
| Gene Length | 648 bp |
|---|
| Protein Length | 215 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 640591498 |
|---|
| Product | HAD family hydrolase |
|---|
| Protein accession | YP_001272229 |
|---|
| Protein GI | 148544859 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0546] Predicted phosphatases |
|---|
| TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 58 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCACAGA AGATTGAGAA TTTTATTTTT GATATTGACG GTACTTTAAT TGATACTATT
GATATGTATA TGCCAGCAAT GATTGATACG TTGGCTCAAC ACGGTCACCC AGTTGCGCCC
GACAAAGTAG AACAAACTAA GCATGACTTA TTTGGTATTA CTGGTCGAGA TGCTCTTCGC
CTCGCTGGAA TTAGTGAGGA AGAAATTCCG AAAATGTTAA AAGACTGGTT TGACCTTGCT
TACCAACGTG CTGATCGGGC AAAAGTGATT GAAGGAATCC CTGAAATGCT TAATACCCTT
GCCAATCGTG AAGATGCAAA GATCGCCATC GCAACTTCAA AACTCGCTGA CGAATACCAA
GAATACTTCG TTAACAAATA TGACTTTGCG AAGTTATTTA AGGTTGCCAT TACGTCTGCG
GATACTAAAA AGCATAAGCC AGCTCCAGAT CCTATTTTAG TGGCAATGGA TAAAATGGGA
GCAGATCCCG CAACTACTGT TTATGTTGGG GACACGATCA ATGATATGAA AGCCGCCCAT
GCAGCCGGTG CCAAGTTTGC AGGCGCCCTT TACTCTTCTG CAAATCCCGA TAGTATTAAA
GATGCGGACT TTCCATTAAT GAAGCCGGCT GATCTGCTAA AAATTTAA
|
|---|
| Protein sequence | MAQKIENFIF DIDGTLIDTI DMYMPAMIDT LAQHGHPVAP DKVEQTKHDL FGITGRDALR
LAGISEEEIP KMLKDWFDLA YQRADRAKVI EGIPEMLNTL ANREDAKIAI ATSKLADEYQ
EYFVNKYDFA KLFKVAITSA DTKKHKPAPD PILVAMDKMG ADPATTVYVG DTINDMKAAH
AAGAKFAGAL YSSANPDSIK DADFPLMKPA DLLKI
|
|---|
| |