| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lreu_1569 |
|---|
| Symbol | |
|---|
| ID | 5188401 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Lactobacillus reuteri DSM 20016 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009513 |
|---|
| Strand | + |
|---|
| Start bp | 1629022 |
|---|
| End bp | 1629732 |
|---|
| Gene Length | 711 bp |
|---|
| Protein Length | 236 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 640591418 |
|---|
| Product | winged helix family two component response transcriptional regulator |
|---|
| Protein accession | YP_001272149 |
|---|
| Protein GI | 148544779 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.000000000954897 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCAAGA AATTTTTGCT AATGAGCCAG CAAGACGATC TCGTCCAACA GTTACAAGCT
ATTTGTAAAA AAGAACACTG GACCTATGAG CTCGTAACTA CTCCAACTGG CTTAGTAGTA
GCCTTAGAAA AAAATCAAAT TAGCGGAATT TGGTGGGATA TGACGGAGGT AAGCTTAGAC
ACTACGATTG CTACCATGAC CCTTATTCGG TCGCAAGTCC AAGGACCGAT TACCGTTTTT
ACTCCTCGCT TTACGGAACA CATTCAACGA AAATTATACC GGGCACATGT TGATGATGTA
ATTGCATTCC CTCTCCTCCT CAGTGTTTTC CGCTCCTTAA TTCAGCATCG CTTGTGGACT
TACCACTATC CACAGATGCA TTCATTAGCT GATGATAATA TGACAAAAAA TGACCCAGTT
ATAACTACTG GATCATGGGA AATTAATCAA GAAACCTATA CTGTTACTAA AAATGATAAA
ACAATCGCTT TAACACCCAA GGAATTTCAA CTACTTTCCT ACTTAGTTGA CCATAAAGGA
CAGGTATTAA ATCGGGATCA ACTCGTTAAT GGAGTTTGGG GATATGATAT TCTTGATACT
TCACGGATCG TTGACATTCA TATCAGCCAC CTCCGCGATA AACTTGAAGA TGACTCCCAA
CACCCTACTC ACCTTCTTAC AGTACGGGGA TTTGGCTATA AATTTGTTTA A
|
|---|
| Protein sequence | MTKKFLLMSQ QDDLVQQLQA ICKKEHWTYE LVTTPTGLVV ALEKNQISGI WWDMTEVSLD
TTIATMTLIR SQVQGPITVF TPRFTEHIQR KLYRAHVDDV IAFPLLLSVF RSLIQHRLWT
YHYPQMHSLA DDNMTKNDPV ITTGSWEINQ ETYTVTKNDK TIALTPKEFQ LLSYLVDHKG
QVLNRDQLVN GVWGYDILDT SRIVDIHISH LRDKLEDDSQ HPTHLLTVRG FGYKFV
|
|---|
| |