| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lreu_1544 |
|---|
| Symbol | |
|---|
| ID | 5188425 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Lactobacillus reuteri DSM 20016 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009513 |
|---|
| Strand | - |
|---|
| Start bp | 1602275 |
|---|
| End bp | 1603609 |
|---|
| Gene Length | 1335 bp |
|---|
| Protein Length | 444 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 640591395 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001272126 |
|---|
| Protein GI | 148544756 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
|---|
| TIGRFAM ID | [TIGR01887] dipeptidase, putative |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.0234535 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATAAAA TTATTACAGA AGATGAACAA AAAGCTGCTG TTAAAATTTT AGAACGACTA
ATTTCTGTTC CATCATATAA TCAACCAGCA GAAGAAGGCG CACCATTTGG CAAAGGAATT
CGTAACGCCC TCGATGAAAT GATGAAGATT TGTGATGAAT TAGGTTTTAA GACCTATGAA
GATCCAGACG GGTACTATGG CTATGCAGAA GTTGGTAGTG GGGACAAAAT TTTTGGTGTA
ATTTGTCATC TTGATACGGT TCCTGCCGGC GATTTAGGCA AATGGAAACA TGATCCATTT
AAAGGCACAG TAATCAATGA TGCAGTTTAT GGACGAGGGT CACAAGATGA TAAAGGTCCA
GGAATTGCAG CTTTATATGC TGTTAAAGCA TTGATGGATC AAGGTTATCA CTTCAATCAA
CGAATTCGTT TTATTTATGG AACTGATGAA GAAATTCTAT GGCGTGGAAT TGCTGAATAT
AATAAAAAGG AAGCGCCGAT TGATAGTGGA ATTTCTCCTG ATGCTGAATT TCCATTAATT
TATGCTGAAA AGGGGTTGCA ACAATCTTAT CTCGTTGGTC CAGGAACAGA TCAACTAAAG
ATTAACTTGA AAAATGCGTT TAATGCGGTC CCTGATAGTG CAGTGTACGA TGGTCCAAAG
CAGGATGAAG TGAAGGCGGC TTTAGATAAG CATGGCTTTG AATATACAAG TGACGGTAAT
TCAATTACTG TTATTGGCAA GTCTGTTCAT GCGATGATGG CACCGGAAGG AACGAATGCT
GTTTTACGGT TAGCGATTGC GCTTGATGAT GTTTTTGATT TTAAGCCACT TGATTTTATT
GGCAAATTAT TTAAGGAAGA TGCAACGGGG AGCAATGTTC TCGGTGATGT TCGCGATGAG
TCTGGACAAT TAACTTTCAA TATTTCTAGT CTTGAAATTA ATGAAAATGA AACAAGAATG
CAGATTGATT TACGAATTCC CGTAACGATC GATCGCGATA ATTTACTAGC AAAACTAAGT
AAACAGGTGG CAGCTTATGA TTTGAAGTAT GTTCATTTTG ATTATTTAGC ACCCCTGTAC
GTTCCAAAAG ACAGTAAATT AGTGCAAACT TTGATGAAAG TTTATAAAGA ACAAACTGGG
GATGTTGCTG CTGAACCGCA AATTTCTGGT GGAGCAACAT TTGCCCGAAC GATGAATAAT
TGTGTTGCTT TTGGGGGAAT GTTACCAACA ACTCCCGACT ATATGCATCA AGCTAATGAA
CAGTGGCCAT TGCCAGACAT GTATAAAGCA ATGGAAATCT ATGCTCAGGC AATCAAGAAG
CTTTGTGTGG ATTAA
|
|---|
| Protein sequence | MDKIITEDEQ KAAVKILERL ISVPSYNQPA EEGAPFGKGI RNALDEMMKI CDELGFKTYE
DPDGYYGYAE VGSGDKIFGV ICHLDTVPAG DLGKWKHDPF KGTVINDAVY GRGSQDDKGP
GIAALYAVKA LMDQGYHFNQ RIRFIYGTDE EILWRGIAEY NKKEAPIDSG ISPDAEFPLI
YAEKGLQQSY LVGPGTDQLK INLKNAFNAV PDSAVYDGPK QDEVKAALDK HGFEYTSDGN
SITVIGKSVH AMMAPEGTNA VLRLAIALDD VFDFKPLDFI GKLFKEDATG SNVLGDVRDE
SGQLTFNISS LEINENETRM QIDLRIPVTI DRDNLLAKLS KQVAAYDLKY VHFDYLAPLY
VPKDSKLVQT LMKVYKEQTG DVAAEPQISG GATFARTMNN CVAFGGMLPT TPDYMHQANE
QWPLPDMYKA MEIYAQAIKK LCVD
|
|---|
| |