| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lreu_1492 |
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| Symbol | rpoB |
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| ID | 5188381 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Lactobacillus reuteri DSM 20016 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009513 |
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| Strand | - |
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| Start bp | 1540959 |
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| End bp | 1544567 |
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| Gene Length | 3609 bp |
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| Protein Length | 1202 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 640591338 |
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| Product | DNA-directed RNA polymerase subunit beta |
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| Protein accession | YP_001272075 |
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| Protein GI | 148544705 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGGCTGGAC ATTTAGTTAA ATACGGTAAA CACCGTACCC GTCGTAGCTA CTCGCGAATT
AAAGAAGTTC TCGAATTGCC AAACCTTATT GAAATCCAAA CCGATTCTTA CAATTGGTTT
ATGGAAAAAG GTTTACGGGA AATGTTTGAT GATATTATGC CAATTGATGA TTTTCAAGGA
AAGCTTTCTT TGGAATTCGT TGACTATCAA CTTTTAGAAC CTAAGTATAC TGTTGACGAA
GCTCGTGAAC ACGATGCTAA TTACTCAGCA CCACTTCATG TTACGTTACG GTTAACTAAC
CATGAAACTG GTGAGATTAA GTCTCAAGAT GTATTCTTTG GTGACTTCCC ACTAATGACT
GACCAAGGTA CATTCATTAT TAATGGTGCC GAACGGGTTA TTGTTTCACA ATTAGTTCGT
TCACCGGGTG TCTACTATAG TGAAGAAAAT GATAAAAATG GTCGGCCAAA CTACGGTGCT
ACCTTTATTC CAAACCGTGG TGCATGGTTA GAATACGAAA CTGATGCTAA GAATGTTTCA
TATGTTCGAA TCGACCGGAC CCGTAAGTTG CCAATGACTG AATTGATTCG TGCATTGGGC
TTTGGATCTG ACGATGAAAT TATCGACATG TTCGGTGGCG ATAGTGAGAC ATTATCATTA
ACCTTGGATA AAGATGTTCA CAAGAACGCT GAAGATTCTC GGGTTGAAGA AGCCTTAAAG
GACATTTATG AACGGCTTCG TCCTGGTGAA CCAAAGACTG CTGATTCAGC ACGGAGCTTA
TTAACAGCTC GTTTCTTTGA TCCAAAGCGT TATGATATGG CACCAGTTGG TCGTTACAAG
ACAAACAAGA AGTTGATGCT TAAGTACCGT TTACTTGGAC AAACTTTAGC TGAAACTTTA
GCAGATCCTG ATACTGGTGA AGTATTAGCA CAAAAGGGTG ATACGGTAAC CAAGGAATTG
CTTAATAAGC TTGAACCTTA CTTAGACCGT GATGACTTTA AGACTATTAC TTACACTCCA
TCAGATGAAG CGGTTGTAAC TGAACCAGTT AAGTTACAAA AGATTTTAGT ATATTCTAAG
AATGATCCTG ATCGAGTTGT ACCTATTATT GGTAACGGTC ATATCCCATT AGAATACAAG
CACATTGAAC CAGCTGATAT TCTTGCTTCC TTAAACTACT TCTTTAACTT ACAAGAAGGT
ATTGGTAGCA CAGACGATAT CGACCACTTA GGTAACCGTC GTATTCGTTC AGTTGGTGAA
CTACTTCAAA ACCAATTCCG GATTGGTCTT GCACGGATGG AACGGGTTGT TCGTGAACGG
ATGTCAATTC AAGATCCTGA CACTGTTACC CCACAGCAAT TAATTAATAT TCGTCCAGTG
GTTGCTTCTA TTAAAGAATT CTTTGGTTCA TCCCAACTTT CCCAGTTCAT GGATCAAACC
AACCCATTAG GTGAATTAAC TCATAAGCGT CGTCTTTCAG CGCTTGGTCC TGGTGGTTTG
ACTCGTGACC GGGCCGGATA TGAAGTGCGG GACGTTCACT ATACTCACTA TGGCCGGATG
TGCCCTATTG AAACACCAGA AGGTCCTAAC ATTGGTCTTA TTAACAGTCT TTCATCTTAC
GCAAGGGTAA ATAAATATGG ATTTATCGAA ACTCCATACC GTCGTGTTTC CTGGAAGGAT
CACAAGGTAA CTGACAAGAT TGATTACTTA ACTGCTGACG AAGAAGATAA CTTCATCATT
GCTCAGGCTA ACACGCCATT AAATGATGAT GGTTCATTTG TTGACGATCA AGTAATGGCT
CGTGATAAGG ATGATTACAT CGAAACCAGT GTTGAAAACA TTGATTACAT GGATGTTTCT
CCTAAGCAAG TTGTTTCTGT TGCCTCTGCA TGTATCCCAT TCCTTGAAAA CGATGACTCT
AACCGTGCTT TGATGGGTGC TAACATGCAA CGGCAAGCTG TTCCTTTGAT CAATCCTCAT
GCACCATTAG TAAGTACTGG TATTGACTAC AAGGCTGCCC ATGACTCTGG GGTTGCAATG
ATTGCTAAGA AGCCAGGAAC GGTTGAATAT GTGGATGCTC GTGAAGTACG GGTTCGTGAA
GAAGATGGAA CACTTGATAC TTACAAGTTA ATGAAGTTCC GTCGTTCAAA CGGTGGTAAG
AACTACAACC AACGTCCAAT TGTTAAGGTT GGCGAACATG TTGATGCTGA TGACGTATTA
GCTGATGGTC CATCAATGGA ACAAGGTGAA TTAGCTCTTG GTCAAAACCC ATTAATCGCC
TTTATGACTT GGCAAGGATA CAACTTCGAA GATGCCATCG CCATTAATGA ACGATTAGTT
AAAGACGATG TTTATACTTC TATCCACATC GAATCATACG AATCTGAAGC ACGTGAAACC
AAGCTTGGAC CTGAAGAAAT GACGCGGGAA ATTCCAAACG TTGGTGACGA TGCTTTGAAG
GATCTTGATG AAAACGGGAT TGTTCGTGTC GGTGCCGAAG TTCATGATGG AGATATTTTA
GTAGGTAAGG TTACTCCAAA GGGAATGACT GAATTATCTG CCGAAGAACG TCTTCTTCAC
GCTATCTTTG GTGAAAAGTC ACGTGAAGTT CGTGATACTT CATTACGTGT TCCTCATGGT
GGTGGTGGAA TCATCCAAGA TGTTAAAGTC TTCACTCGTG AAAATGGGGA TGAATTATCA
CCAGGTGTAA ATACAATGGT TCGTGTTTAC ATTGCACAAA AGCGGAAGAT CCAAGTTGGG
GATAAGATGT CTGGACGTCA TGGTAACAAG GGTACTGTTT CTATCGTTGT GCCAGAAGAA
GATATGCCAT ACATGCCAGA TGGAACTCCT ATTGATATTA TGCTTAGTCC GATGGGTGTG
CCAAGTCGTA TGAACATTGG TCAGCTTCTT GAATTGCACC TAGGAATGGC TGCTCGTCGT
CTTGGAATTC ATATGGCTAC TCCAGTATTC GATGGTGCAT CTGATAAAGA TGTTTGGGAT
GCTGTTCGTG AATCTGGATT CCCAGAAGAC GGTAAGACAA TTCTTTATGA CGGTCGTACC
GGTGAACCAT TTGAAAACCG AATTGCTGTT GGTTCAATGC ACTATCTTAA GTTAGCTCAC
ATGGTTGATG ATAAGATTCA CGCTCGTTCA ACTGGTCCAT ACTCACTTGT TACTCAACAG
CCATTAGGTG GTAAGGCACA ATTTGGTGGA CAGCGTTTCG GTGAAATGGA AGTTTGGGCT
CTTGAAGCTT ATGGTGCTGC CTACACTCTT CAAGAAATCC TTACTTACAA GTCAGATGAT
ACTGTTGGTC GTGTTCGGAC TTATGATGCA ATCATCAATG GTCAACCAAT TCCTAAGCCA
GGTGTTCCAG AATCATTCCG TGTTCTTGTT AAGGAATTAC AAGCATTAGG TCTTGATATG
AAGGTTCTTG ATGGTAACAA CAAGGAAATT CAGTTAAAGA ACATGGACGA AGATGATGAT
GAAGTTGTAA ATGTTGATGC ATTAGCTAAA TATGCAGAAG AACATAAAGC AGACGATAAG
AAGAACGAAG AAGAAAACAA GTCTGAAGCA ACTTCAACAA CTACCGATGA CAAAACTAAT
CAAAATTAA
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| Protein sequence | MAGHLVKYGK HRTRRSYSRI KEVLELPNLI EIQTDSYNWF MEKGLREMFD DIMPIDDFQG
KLSLEFVDYQ LLEPKYTVDE AREHDANYSA PLHVTLRLTN HETGEIKSQD VFFGDFPLMT
DQGTFIINGA ERVIVSQLVR SPGVYYSEEN DKNGRPNYGA TFIPNRGAWL EYETDAKNVS
YVRIDRTRKL PMTELIRALG FGSDDEIIDM FGGDSETLSL TLDKDVHKNA EDSRVEEALK
DIYERLRPGE PKTADSARSL LTARFFDPKR YDMAPVGRYK TNKKLMLKYR LLGQTLAETL
ADPDTGEVLA QKGDTVTKEL LNKLEPYLDR DDFKTITYTP SDEAVVTEPV KLQKILVYSK
NDPDRVVPII GNGHIPLEYK HIEPADILAS LNYFFNLQEG IGSTDDIDHL GNRRIRSVGE
LLQNQFRIGL ARMERVVRER MSIQDPDTVT PQQLINIRPV VASIKEFFGS SQLSQFMDQT
NPLGELTHKR RLSALGPGGL TRDRAGYEVR DVHYTHYGRM CPIETPEGPN IGLINSLSSY
ARVNKYGFIE TPYRRVSWKD HKVTDKIDYL TADEEDNFII AQANTPLNDD GSFVDDQVMA
RDKDDYIETS VENIDYMDVS PKQVVSVASA CIPFLENDDS NRALMGANMQ RQAVPLINPH
APLVSTGIDY KAAHDSGVAM IAKKPGTVEY VDAREVRVRE EDGTLDTYKL MKFRRSNGGK
NYNQRPIVKV GEHVDADDVL ADGPSMEQGE LALGQNPLIA FMTWQGYNFE DAIAINERLV
KDDVYTSIHI ESYESEARET KLGPEEMTRE IPNVGDDALK DLDENGIVRV GAEVHDGDIL
VGKVTPKGMT ELSAEERLLH AIFGEKSREV RDTSLRVPHG GGGIIQDVKV FTRENGDELS
PGVNTMVRVY IAQKRKIQVG DKMSGRHGNK GTVSIVVPEE DMPYMPDGTP IDIMLSPMGV
PSRMNIGQLL ELHLGMAARR LGIHMATPVF DGASDKDVWD AVRESGFPED GKTILYDGRT
GEPFENRIAV GSMHYLKLAH MVDDKIHARS TGPYSLVTQQ PLGGKAQFGG QRFGEMEVWA
LEAYGAAYTL QEILTYKSDD TVGRVRTYDA IINGQPIPKP GVPESFRVLV KELQALGLDM
KVLDGNNKEI QLKNMDEDDD EVVNVDALAK YAEEHKADDK KNEEENKSEA TSTTTDDKTN
QN
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