| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lreu_1431 |
|---|
| Symbol | |
|---|
| ID | 5188735 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Lactobacillus reuteri DSM 20016 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009513 |
|---|
| Strand | - |
|---|
| Start bp | 1484849 |
|---|
| End bp | 1485343 |
|---|
| Gene Length | 495 bp |
|---|
| Protein Length | 164 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 27% |
|---|
| IMG OID | 640591277 |
|---|
| Product | isochorismatase hydrolase |
|---|
| Protein accession | YP_001272014 |
|---|
| Protein GI | 148544644 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG1335] Amidases related to nicotinamidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 63 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTAAGT CAGCTCTTAT AATAATAGAT TTACAAAATG GTGTTTGTAA ATCAGATCAA
GTTATTTTTA ACTATGAAAA TTTAATATCA AAAATAAATA GACGTATTGA TTACTATCGG
AGCCAGAATT TTCCAATTAT CTTTATCCAG CACGAAGATA ATTTCCTTCA AAAAAATTCT
ATTGCTTGGC AGCTTGTGTC CGATTTGCAT TATAAGAAAA ACGATATTTT ACTGAGTAAA
AAGCATCCTA ATTCTTTTTA TCAAACCAAT CTAAAGAAAA TTTTAGAAAA CTTAGGTATT
AATAATTTAG AAATTTGTGG AGCTCAGACT GAATACTGTG TTGATGCAAC AATTAAAATG
GCACATGGAT TAGGATATCA AGTAATAATG CAACACAATG CTAGCAGTAC ATTTGATAAT
AAATATATGA CAGCTGAAGA TACTATCAAT TTTTTTGAAA ATATTTGGAA TAATAGGTTT
CTTACATTTA TTTGA
|
|---|
| Protein sequence | MTKSALIIID LQNGVCKSDQ VIFNYENLIS KINRRIDYYR SQNFPIIFIQ HEDNFLQKNS
IAWQLVSDLH YKKNDILLSK KHPNSFYQTN LKKILENLGI NNLEICGAQT EYCVDATIKM
AHGLGYQVIM QHNASSTFDN KYMTAEDTIN FFENIWNNRF LTFI
|
|---|
| |