| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lreu_1334 |
|---|
| Symbol | |
|---|
| ID | 5189143 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Lactobacillus reuteri DSM 20016 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009513 |
|---|
| Strand | - |
|---|
| Start bp | 1388645 |
|---|
| End bp | 1390087 |
|---|
| Gene Length | 1443 bp |
|---|
| Protein Length | 480 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 640591190 |
|---|
| Product | glycosyl hydrolase 53 protein |
|---|
| Protein accession | YP_001271928 |
|---|
| Protein GI | 148544558 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3867] Arabinogalactan endo-1,4-beta-galactosidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 55 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGTTAAAAG CAATTTTTGC TGGCCTAGCA GGTAATGAAT ATGCTTTAGA TGGTGCAAAG
AATTGCTATG CCGATAATGG GGATGCTTAC CATTATGAAT TTTGGCTAGC TGGAAAAGAT
GCTACTGAGA AGTTAAATAA TTTCTTGATA GCTAATAATG GTGTTAAGTA TGGTGATCCA
ATTAAGATAA CGTATACTGC TACTTTAACT TGGGGTGCAG CTAAGAGCAC TGCTAATGAT
AAGACCCCGG CCAGTCGAAA AACTGCTGAA GAACTCAACC TAGCATATAA GACAGGTACT
GATACTGGTC TCCGTTATGA TAGTATTACT GTTGAGAAGA TTCCAAACAT GTCAGATGAT
ATGATTCGTG GAGTTGATAT TTCCAGTTAC CAGTCTTTAA TTAATGCTGG TGTTAAATTC
TATGACTTTA ATGGTCAAGA AGCTAACTTG TTTAAGATGT TAAAAGATGC TGGTGTAAAC
TGGATTCGTC TTCGTCTATG GAATGATCCA TACAATGCAG AAGGCTTTGG TTATGGTGGT
GGAAATAATG ATGAAGAGTC ATTAGTCAAG ATGGCTAGTG AGGCAAGTCA ATATGGAATG
AAAATCTTAG TTGACTTCCA CTACTCTGAT TTCTGGGCTG ATCCAGCTAA GCAACCGCTT
CCCAAAGCAT GGAAGAATTT ATCGTCAGCT GATCTTACAA AAGAGATAAG TTTATACACA
AGCAAAGTTC TTAACGATTT GAAGCAGGCC GGCGCTGATG TTGAAATGGT TCAAGTAGGG
AATGAAGTAA CTAATGGTGC TTTTGGTATT TGGACCGGCC GTGACCATGG TGAAAACTGG
GCGACTATAT GGGAAAGTGA CCAAGGAAAC CAAGTTGCTA AATATTTAGG AACCGCGTCA
GGAGCAGTTA GGTCAGTATT ACCAAATGCC AAGATTGCCA TTCAGCTTGA GACACCAAAC
ATTAGTAAGT ATCGTAGCAT TATGACGGTT TTGAAGAATA ATAATGTCGA GTATGACTAC
CTAGGAACTT CTTATTACCC ATTCTGGTCG ACTCATGACG GTAATAGTTG GTATGACAAT
GTTGATCTGG GATATGGCGC AAGTACACCA ATTAACTTAG AAGCGATTGA AAAGATGGCT
TGGCGGAAAT TTGGTAAGAA AACTGTTGTA CTAGAAACAG GCTGGATTAA TAATGTCAAT
GATGCCGATG GGACAGGAAA TTCTATTAGT GCTAATGATG AGATTCAAGC ATATAGTCAT
GATCCGCAAG GGCAGGTTAA TGCAATTGAA GATATGTATA AAGCATTAGT TGCCCAAGGC
GGAGTAGGTG GATTCCTGAT AAAGCTGGTT GGCAAAATTG GGACTATAAT AAGAAAATGT
CTGATGTATA TGGAACCGGT TGGGCATCAA AGAATGCAGT TGGTTATGCT CCAGATTCAG
TGA
|
|---|
| Protein sequence | MLKAIFAGLA GNEYALDGAK NCYADNGDAY HYEFWLAGKD ATEKLNNFLI ANNGVKYGDP
IKITYTATLT WGAAKSTAND KTPASRKTAE ELNLAYKTGT DTGLRYDSIT VEKIPNMSDD
MIRGVDISSY QSLINAGVKF YDFNGQEANL FKMLKDAGVN WIRLRLWNDP YNAEGFGYGG
GNNDEESLVK MASEASQYGM KILVDFHYSD FWADPAKQPL PKAWKNLSSA DLTKEISLYT
SKVLNDLKQA GADVEMVQVG NEVTNGAFGI WTGRDHGENW ATIWESDQGN QVAKYLGTAS
GAVRSVLPNA KIAIQLETPN ISKYRSIMTV LKNNNVEYDY LGTSYYPFWS THDGNSWYDN
VDLGYGASTP INLEAIEKMA WRKFGKKTVV LETGWINNVN DADGTGNSIS ANDEIQAYSH
DPQGQVNAIE DMYKALVAQG GVGGFLIKLV GKIGTIIRKC LMYMEPVGHQ RMQLVMLQIQ
|
|---|
| |