Gene Lreu_1172 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLreu_1172 
Symbol 
ID5188247 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLactobacillus reuteri DSM 20016 
KingdomBacteria 
Replicon accessionNC_009513 
Strand- 
Start bp1225685 
End bp1226638 
Gene Length954 bp 
Protein Length317 aa 
Translation table11 
GC content41% 
IMG OID640591011 
Productmethionyl-tRNA formyltransferase 
Protein accessionYP_001271766 
Protein GI148544396 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0223] Methionyl-tRNA formyltransferase 
TIGRFAM ID[TIGR00460] methionyl-tRNA formyltransferase 


Plasmid Coverage information

Num covering plasmid clones35 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCAACAT CAGTCGTTTT TATGGGAACA CCGGAGTTTG CTGTTCCGAT TTTACAAAGT 
TTAATTGATA ATCCAGAATA CGATGTTCAA GCAGTTCTTA CCCAGCCAGA CCACCATATC 
GGCCGGAAAC GTACTCTTCA TCAATCGCCA GTTAAAGAGT TAGCTGAACA ATATAATATC 
GAAGTCTTAC AGCCGGCTAA ACTCAGCAAA AGTCCTGAAA TGGAGAAAAT TATTAGTTTA 
CAGCCTGACT TAATGATTAC TGCTGCTTAT GGGCAATTCC TTCCAACAAA GTTATTGGCG 
GCTGCTAAAA TTGCGGCAAT CAATGTTCAC GGTTCATTAC TGCCAAAATA TCGTGGAGGG 
GCTCCAATTC AATATTCCAT CATTAATGGT GACAAAGAAA CCGGGGTCTC CATTATGTAC 
ATGGTTAAGA AGATGGATGC GGGAGATATT ATTTCACAAA GGTCTATTCC GATTGAAGAC 
ACTGATGATA GTGGCACGAT GTTTAAGAAG CTTAGTTTAC TAGGAAGAGA CTTGCTGTTA 
GAAACGTTGC CTAAACTTAT TAGCGGGGAT GTTAATCCGG TCGCTCAAGA TCCGGATAAC 
GTAGTCTTTT CTCCCAATAT TACTAGTGAA CAAGAACAGA TTGATTTCCG CCTTCCAGCA 
CATTTAATTG ATGCGAAGGT GCGGGGATTA CGGCCGGCTC CTCTTGGTAA CATGGTTATT 
GATGGATTAC GTACAAAAAT TTACGATGTG ACCCCATTAG AAGAAAAAAC AGACCTTGAA 
CCAGGAAAAG TAGTGCGGGT CACGAAACAT CAATTAGTAA TTGCTGCTGG AGATGGAACG 
ACATACCAGA TTAATAAGTT AAAGCCAGCA GGGAAAAAGG CGATGGACAT TACATCCTAC 
CTTAATGGAC ATAAAGATAT TACAGAGGGA GGCCAAGTTG TAAGTGAAGA CTAA
 
Protein sequence
MSTSVVFMGT PEFAVPILQS LIDNPEYDVQ AVLTQPDHHI GRKRTLHQSP VKELAEQYNI 
EVLQPAKLSK SPEMEKIISL QPDLMITAAY GQFLPTKLLA AAKIAAINVH GSLLPKYRGG 
APIQYSIING DKETGVSIMY MVKKMDAGDI ISQRSIPIED TDDSGTMFKK LSLLGRDLLL 
ETLPKLISGD VNPVAQDPDN VVFSPNITSE QEQIDFRLPA HLIDAKVRGL RPAPLGNMVI 
DGLRTKIYDV TPLEEKTDLE PGKVVRVTKH QLVIAAGDGT TYQINKLKPA GKKAMDITSY 
LNGHKDITEG GQVVSED