Gene Lreu_1152 details

Gene Information

• Locus tag: Lreu_1152
• Symbol: rimM
• ID: 5188356
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Lactobacillus reuteri DSM 20016
• Kingdom: Bacteria
• Replicon accession: NC_009513
• Strand: -
• Start bp: 1204263
• End bp: 1204769
• Gene Length: 507 bp
• Protein Length: 168 aa
• Translation table: 11
• GC content: 38%
• IMG OID: 640590991
• Product: 16S rRNA-processing protein RimM
• Protein accession: YP_001271746
• Protein GI: 148544376
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0806] RimM protein, required for 16S rRNA processing
• TIGRFAM ID: [TIGR02273] 16S rRNA processing protein RimM

Plasmid Coverage information

• Num covering plasmid clones: 3
• Plasmid unclonability p-value: 0.000000000355761
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGAATATT ATAATGTTGG TAAAATTGTA AATACTCATG GTGTTCGCGG AGAAGTGCGC 
GTATTAGCAA CTACTGATTT TATTGATGAA CGATTTGCCA AGGGAAATAC CTTGTACCTA 
CAACAATCAG GCGAACCTTT ACCATTGACG ATTGAAAGTA CGCGGCAACA TAAGGGCTTT 
GTTCTTGTTA AGTTTGTCGG CTACGATAAT ATCAATGATG TTGAACAATT CCGTGACCAT 
GAATTAATGG TCAGTGCTGA TGATCAACAA CCCTTAGACG ATGGTCAATA TTACTACCAC 
CAGATTATTG GATTAGACGT TGAAACAACA GATGGCCGTC ACCTGGGGAA AATTAAGGAA 
ATTCTATCTC CTGGTGCGAA TGATGTGTGG GTTGTTGAAC GCCCAGAAAA ACGGGATTTA 
TTATTACCAG TGATTGATGA GGTTGTTAAA AACGTTGATC TTGATAAGAA TTTTGTAACA 
GTCGAATTAA TGGAAGGACT TGAATAA 

 

Protein sequence

MEYYNVGKIV NTHGVRGEVR VLATTDFIDE RFAKGNTLYL QQSGEPLPLT IESTRQHKGF 
VLVKFVGYDN INDVEQFRDH ELMVSADDQQ PLDDGQYYYH QIIGLDVETT DGRHLGKIKE 
ILSPGANDVW VVERPEKRDL LLPVIDEVVK NVDLDKNFVT VELMEGLE