| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lreu_1041 |
|---|
| Symbol | |
|---|
| ID | 5189280 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Lactobacillus reuteri DSM 20016 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009513 |
|---|
| Strand | - |
|---|
| Start bp | 1101780 |
|---|
| End bp | 1103183 |
|---|
| Gene Length | 1404 bp |
|---|
| Protein Length | 467 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 640590883 |
|---|
| Product | amino acid permease-associated region |
|---|
| Protein accession | YP_001271638 |
|---|
| Protein GI | 148544268 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0833] Amino acid transporters |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.000000000184403 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTAAGA AAACGCATTT AGCTCGTGAA ATGAGTGCTC GTCATATCCA GATGATTGCG
CTTGGTGGGG TGATCGGGAC CGGCCTATTT CTCAGTTCTG GTTACACGAT TCATCAAGCT
GGGCCGTTGG GAACCGTTAT TGCTTATTTG ATTGGTGCGT TAATCGTTTA TGCCGTCATG
CTATGTTTAG GTGAGTTGAG TGTTGCGATG CCGTATACGG GGGCTTTTCA TGTTTATGCC
AAAAATCTGA TTGGGCCTGC TACTGGATTT ACCGTTGCGA TCCTTTATTG GTTGACTTGG
ACGATTGCGA TGGGCTCCGA ATTTACCGCG GCTGGCCTAA TTATGAAGCG CTGGTTTCCC
CAGATTCCGG TTTGGTGGTG GAGCTTGTTA TTTATCATTA TTATCCTCTT ATCTAACATT
TTTACTGTCA AAGCATTTGC GGAAAGCGAA TTTTGGTTTG CGGTGATTAA AGTAGTCGCA
ATCTGCGCGT TTATTTTGTT AGGAGCTTTA GCAGTAATTG ATCTTATCCC GATTCAAGGT
TATCATCATG CCCCTTTGCT GAACAACTTT ACTAAGGATG GGCTATTTCC AGGCGGTTTT
AGCGGCTTAT TTATGACGAT GCTAACGGTT AATTTTGCTT TCTCTGGGAC TGAATTAATC
GCCATCACCG CGGGGGAAAC GAAGCATCCT GAAAAGACCC TCCCTAAGGC AATTCATACT
ACTTTATGGC GCTTAGTGAT CTTCTTTGTC GGGAGCATGA TTGTTATGGC TTCTTTGATT
CCTTATCAAA AGGCGGGGGT AACGCAAAGC CCATTTGTCT ACGTTTTTAG CCAACTTGGA
ATTCCATATG CTGCCGATTT AATGAATTTT GTTGTCCTCA CCGCGATTAT CTCTGCCGCT
AATTCTGGTT TATACGCATC AACCCGGATG TTATGGTCAT TAGCTAATGA AGGAACGATT
CCGGCTGTCA TCGCCAAAAC TAATAAGCGC GGTATTCCGG TTTTCGCATT GCTCTTAAGT
ATGCTTGGTG GGGTGTTAGC TTTGCTTTCC AGCATCTATG CGGCTGGAAC GGTCTATTTA
GTCTTGGTTT CTGTTTCTGG ATTAGCGGTT GTCTTTGTAT GGATTGCAAT TTCCTTATGT
GAACTCATTT TTCGTCGGCG CTTTTTAGCA GCTGGTCACC AGTTAAGTGA GTTAAAGTAT
CGCACGCCAT GGTATCCGGT TGTTCCATGG TTTGCATTTA TTGCTAGCAG CCTTTCTTGC
ATCTTAATTT GGTTTGATCC ACAACAACGA ATTGCCTTGT ATTGTACGAT TCCGTTTGTA
ATTGTTTGTT ATGCTGCTTA TTATTTACAG ACATTGTGGC GCAAGTATAC TACGAAGAAA
AAGGTTTCAA CAGTTGTTAA ATAG
|
|---|
| Protein sequence | MTKKTHLARE MSARHIQMIA LGGVIGTGLF LSSGYTIHQA GPLGTVIAYL IGALIVYAVM
LCLGELSVAM PYTGAFHVYA KNLIGPATGF TVAILYWLTW TIAMGSEFTA AGLIMKRWFP
QIPVWWWSLL FIIIILLSNI FTVKAFAESE FWFAVIKVVA ICAFILLGAL AVIDLIPIQG
YHHAPLLNNF TKDGLFPGGF SGLFMTMLTV NFAFSGTELI AITAGETKHP EKTLPKAIHT
TLWRLVIFFV GSMIVMASLI PYQKAGVTQS PFVYVFSQLG IPYAADLMNF VVLTAIISAA
NSGLYASTRM LWSLANEGTI PAVIAKTNKR GIPVFALLLS MLGGVLALLS SIYAAGTVYL
VLVSVSGLAV VFVWIAISLC ELIFRRRFLA AGHQLSELKY RTPWYPVVPW FAFIASSLSC
ILIWFDPQQR IALYCTIPFV IVCYAAYYLQ TLWRKYTTKK KVSTVVK
|
|---|
| |