| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lreu_1031 |
|---|
| Symbol | |
|---|
| ID | 5189182 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Lactobacillus reuteri DSM 20016 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009513 |
|---|
| Strand | - |
|---|
| Start bp | 1088444 |
|---|
| End bp | 1091545 |
|---|
| Gene Length | 3102 bp |
|---|
| Protein Length | 1033 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 640590873 |
|---|
| Product | SMC domain-containing protein |
|---|
| Protein accession | YP_001271628 |
|---|
| Protein GI | 148544258 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0419] ATPase involved in DNA repair |
|---|
| TIGRFAM ID | [TIGR00618] exonuclease SbcC
[TIGR03185] DNA sulfur modification protein DndD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGTCCAT TAACGATTGA ACTACATTAC TTTGGACCGT ATGAGCATCA AGTGATTGAC
TTTACGCAGT TCACAGAGCG TTCCTTATTT CTGGTAGCAG GGAATACTGG TGCAGGGAAA
ACCACGATTT TTGATGCAAT GTGTTATGCG CTTTTTGGTC AAACAACCAA TGATCGTGAT
CGGTCGGCTG CTGCTTTGCG TTCTGATTTC GCACCAGCTG ATCAAGAAAC AATGGTGAAG
TTTACCTTTG AACACCAAGA CCTTAAATAT CAAATTATGC GTCGTCCTAA ACAGGTTTTA
AAGGGACGCC GCGACAATTT GGTTGAACAT AATCAAGCCG TTGATCTTAT TTACCCGCTT
GAAAGCGATC ATCCCCAGAA AATCACTAAA ATCAAGGAGG CAGACACGTT TATTACTGAC
TTGCTCAATC TGACCCGTGA TCAATTTAAG CAGATTGTCC TTCTCCCTCA AGGAAAGTTT
CGGCAGTTTC TTGATTCAGA TAGCAATACT AAGGAAGCCC TTCTACGTGA CCTCTTTAAT
ACGTCCCGTT ATGAGCAGTG GGCAACGCAG CTAAAAAATG ATTTGCGTGA ACAGAAGAAG
TCATTGACGA CTCAAGAAAC AAAACTTCAA TCATTAAAGG AAACAGTAAC CGCGATTGAT
GCGCAATTAA CAACTAAAGA ATGGTTAGCG GAAGCAAAAA ATTACTTATC CCGACTAAAA
GCTAATCTTG AACACTTGGG CGATGATGAG CAGCAACAGC AAAAGAAAGT TGATCAGCTT
GATGCCCAAC TTCATACTGA GCAAGAGTTG AAGAAGAATA TTGAGGAGTT AGCTGAACTT
ATCAAGGTTG GAAAAACACT GCAAGCTCAA GCGGGAGAGA TCCAAGAAAC AAAGCAGCAA
GTAAAAGTCC TTGAATGGTA CCAAGAACAC CAGACAGAAT ATCAACGGTG GAAAGATGGC
GAAAAACGTC TCCAAAAATT AACGTTAGAC AATAAATTTC TCCATGAGGA CCTGCGCAAC
CTTCAAAAGC AACAGCAAAC AATTGAAACC GACCTACAAC AAACGAGTAA GCAGCAAGAA
GAAATTGATC AGCTTCAAAC TGAGGTCGCC GACTTGACGA ATAAACTCCC ATTCTTCGAT
GATCGAGATA AGCTAAAATC AGCTGTCGAT GAACTACAAA CAAACTTAAA GCAGCAGGAA
AAACAGCAAG CTGCTTCCCA GAAGAAGTTG CAAGACGCTC AACAGCAATT GACGGTTGTT
ACTAATAATT TAAAAGAGCA TGAAAACTTG GGTGAGGTTC AAGTTTACAT AGCAAAACAA
GAAGGCCTTC AGGAAAAATT AACGACTGCT GGAAAAGATT TAAAGCAATT AGAAACAAAA
CTTTTATCTG AAAAGAAAAA TTGCGCGAAA TTAGAGCAAA AGCAGGGGGA TGCTGAAAAA
CTCGTTCAAA AATCGCAAGG TGAGTTGGAT GACTTAAATG ATCGCTTTGC CCGTCACCAA
ATTGCCATTC TTGCTCAAAA ATTAAAGCCG GCCACCCCTT GCCCAATTTG TGGATCACTT
GACCACCCCC ATCCGGCAAG CTTAGCAGAT GATGGTGAAT TGGTAACGGA AGCGCAAGTT
AAAGCGGCAA CCGTTAAAGC TCAACAAAAC CGTAGTAGGC TTGACCAGTT AAAAGAGCAA
GTTCGCCAAA GCGTTGCCCA AATTGCGAAC TTAACAACAC AGGTAGAAAC TCGGCAGGCG
AATTTAGCTG AACTGTTAGG GGATAATGAA TTACCGAGTG ATTGGGAGGG ACAAATCGAA
AGTCACGCTC AAAAACTAGC AGAAATGAAG ACTGACCTCG ATAGAATAGA ACAACAGGTT
AAAGAATGGC GCCAAGAAGA GGAAGAATTG CAACAAGAAT CCAAGTTCTC TCAAGAAGAA
TTAGATAAAA TAGACGAAAG TGTGAACCGC TGCAAACAGG ATTTAATCGC CAAGCAGACT
ATTCTGAAAG AAAAAGCAGC TTCTTTACCA GCAAAATTTC CTACTAAAGA AGCTGCTGAC
AAGCGAATTC AAACTGATCA ACTAAAGATC AAAGCCTTTA ATAACCAGCT TGAGTCATTG
CAACAACAAC GACAAGAAAA TGCCAAAAAA TTAGCAGGGA CAAATAGTCG GATCGACCAG
ACTAAAGAAG AACTTGCCAC CCAAACGACG CAACAGGATA ACTTACACCG ATATCTTGTG
AATCTTTTAG CCCAATATGA TGTCCAACTT AAATGGAATT TCTGGCAAGA AGCTAGTGAA
CAAGTGGCAA CATTGTCATC TTTACGTGAA CAGGTAACGA CCTTTGAGAA TCAAGTCCAG
GATAATCAGT CCCAACAAGA GCGGTTGACT AAGGCCATCA ATAGTCATCC CATGCCAGAT
ATTACATCAA CGCAGACAAA ACTTAATGCT GAGCGTGAAC AACTTCGGCA ATATCAGCAA
GAAATTGGTC AGTTAACTGC TCAGTATAAG CAATTAGAAG AAACGGATCA AAAGATTATT
AAGGCAGTCG AAAAAACTGG AAAACTTGAT CAAGAAATTA ATGAATTACA AACATTAACA
GATGTTGTGA CTGGGAATAC CGAAAATCAC GTTAGCCTAG AACGGTATGT ATTACAGGCA
TATTTTCAAG ATGTCTTAGT AGCAGCCAAT ATTCAGTTAG ACCGGTTAAC TAATAGTCGC
TACCAGTTTG AATTAGCAAC GGAAAGTCAT GGGGCCGGTG CCAAGTGGAG TGGGCTTGAA
GTTAATGTAT ATGATGATAA TGCTGGCAGA ACGCGAAGTG CCCGGACGCT TTCTGGTGGT
GAAAGTTTTA TGGCTTCGCT TGCTCTTGCT TTAGCTCTCT GCCAGATTGT CCAAGAGCAA
AGTGGGGGAA TTAAGATTGA TGCGCTCTTT ATCGATGAAG GATTTGGTTC CCTTGATCAG
CAAGCTCTTG AAGATGCTCT TCATTCCCTT CAAGAACTTG AAGGCCACCG GATGATTGGA
ATTATCAGTC ATATCACTGA ACTTGAGGAG CAAATTCCAG ATCAGTTAAT TGTTCGATCA
AGAAATGGCC GTAGTTATGT CGCATACCAG CATGAAATAT AA
|
|---|
| Protein sequence | MRPLTIELHY FGPYEHQVID FTQFTERSLF LVAGNTGAGK TTIFDAMCYA LFGQTTNDRD
RSAAALRSDF APADQETMVK FTFEHQDLKY QIMRRPKQVL KGRRDNLVEH NQAVDLIYPL
ESDHPQKITK IKEADTFITD LLNLTRDQFK QIVLLPQGKF RQFLDSDSNT KEALLRDLFN
TSRYEQWATQ LKNDLREQKK SLTTQETKLQ SLKETVTAID AQLTTKEWLA EAKNYLSRLK
ANLEHLGDDE QQQQKKVDQL DAQLHTEQEL KKNIEELAEL IKVGKTLQAQ AGEIQETKQQ
VKVLEWYQEH QTEYQRWKDG EKRLQKLTLD NKFLHEDLRN LQKQQQTIET DLQQTSKQQE
EIDQLQTEVA DLTNKLPFFD DRDKLKSAVD ELQTNLKQQE KQQAASQKKL QDAQQQLTVV
TNNLKEHENL GEVQVYIAKQ EGLQEKLTTA GKDLKQLETK LLSEKKNCAK LEQKQGDAEK
LVQKSQGELD DLNDRFARHQ IAILAQKLKP ATPCPICGSL DHPHPASLAD DGELVTEAQV
KAATVKAQQN RSRLDQLKEQ VRQSVAQIAN LTTQVETRQA NLAELLGDNE LPSDWEGQIE
SHAQKLAEMK TDLDRIEQQV KEWRQEEEEL QQESKFSQEE LDKIDESVNR CKQDLIAKQT
ILKEKAASLP AKFPTKEAAD KRIQTDQLKI KAFNNQLESL QQQRQENAKK LAGTNSRIDQ
TKEELATQTT QQDNLHRYLV NLLAQYDVQL KWNFWQEASE QVATLSSLRE QVTTFENQVQ
DNQSQQERLT KAINSHPMPD ITSTQTKLNA EREQLRQYQQ EIGQLTAQYK QLEETDQKII
KAVEKTGKLD QEINELQTLT DVVTGNTENH VSLERYVLQA YFQDVLVAAN IQLDRLTNSR
YQFELATESH GAGAKWSGLE VNVYDDNAGR TRSARTLSGG ESFMASLALA LALCQIVQEQ
SGGIKIDALF IDEGFGSLDQ QALEDALHSL QELEGHRMIG IISHITELEE QIPDQLIVRS
RNGRSYVAYQ HEI
|
|---|
| |