| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lreu_0721 |
|---|
| Symbol | |
|---|
| ID | 5189601 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Lactobacillus reuteri DSM 20016 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009513 |
|---|
| Strand | + |
|---|
| Start bp | 789054 |
|---|
| End bp | 791291 |
|---|
| Gene Length | 2238 bp |
|---|
| Protein Length | 745 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 640590554 |
|---|
| Product | (p)ppGpp synthetase I, SpoT/RelA |
|---|
| Protein accession | YP_001271322 |
|---|
| Protein GI | 148543952 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0317] Guanosine polyphosphate pyrophosphohydrolases/synthetases |
|---|
| TIGRFAM ID | [TIGR00691] (p)ppGpp synthetase, RelA/SpoT family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.000000000459955 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCAAAAG AAAAGGAATT GACACATGAA GATGTTCAAA AGATGGTTAG TTCTTATATG
AATGAAGAAC ACGTTGCTTT AGTTGAAAAG GCATATCATT TTGCCGAGGT AGCTCACCAT
GACCAACGAC GTAAATCTGG AGAACCGTAT ATTATTCATC CTATCCAAGT TGCGGGGATC
CTTGCTAATC TTCATATGGA TCCCGAAACA GTTTGTGCAG GATATTTACA TGATATTGTA
GAAGATACTG GCGCAACCTT AGATGATATT AAAGAACTCT TTGGACCAAC CATTGCAATG
ATTGTTGATG GTGATACAAA GCTTGGTAAG ATTCGTTACA AATCAAATAA AGAACAAATG
GCTGCCACTC ATCGTAAATT ATTACTTGCA ATGTCAAAGG ATATTCGGGT AATGATTGTT
AAGCTTGCGG ACCGGCTTCA TAATATGCGC ACCCTTAAGC ATTTGCGACC TGATAAGCAG
CGCCGCATCT CAAATGAAAC CCTTGAAATT TATGCTCCAA TTGCAGATCG CTTGGGTATC
AGTACTATTA AGTGGGAACT AGAAGACCTG TCATTACGGT ACTTAAATCC GCAACAATAT
TACCGGATTG TCCATTTGAT GAATTCACGG CGCGATCAGC GGGTTGACTA TATTGATGAG
TCAATTAAGT TAATAAAGAA GGCGATTGCG GATTTGGACT TAGGACCGAA TGTTGAAATT
TATGGCCGGC CTAAGCATAT TTATTCTGTC TACCGTAAAA TGGTTACTCA ACATAAGCAA
TTTAGCCAAA TCTATGACCT CCTCGCGGTT CGAATTGTCG TTGACTCAAT TCGTGACTGT
TATGCTGCTC TTGGAGCTAT CCATACTAAT TGGAAACCAA TGCCTGGACG GTTTAAGGAT
TATATTGCAA TGCCTAAGAC TAACGGATAC CAATCCTTGC ATACAACAAT TATTGGACCA
GAAGGACGAC CATTAGAAGT GCAGATACGG ACTCACAAGA TGCATGAAAT TGCTGAATAT
GGGGTTGCTG CTCACTGGGC ATATAAAGAA GGTAAGACTA ATGGAATCCA ACAAACTCAG
GATAGTCAAA AGCTAAATGT CGTCAAAGAA ATCCTTGAAT TACGAAGTGA AAGTCAAGGC
ACAGATGAAT TTATGCAGGG GATTCAGAGT GATATATTTA CTGATAAGGT CTATGCATTT
ACCCCTAAAG GTGACGTAAT TGAAATGCCT AAGGGATCTG GCCCACTTGA TATGGCTTAC
CAAATTCATA CTGAGGTTGG TAATCATACA ACTGGAGCTA AAGTAAATGG ACGGATTGTA
CCCCTTGATT ATGAGATCAA AAATGGTGAC ATTGTTGATA TTTTGACTTC ATCATCATCA
GCTGGTCCAA GTCGTGATTG GTTTGATTTG GTTTCAACAC GGCGGGCTCG TAATAAGATT
CGCCAATTCT TCCGTGCACA CGATCGGGAA AAGAACATTG AAGAAGGAAA ACAGCTTCTT
GAAAATGAAC TCCGTGAAGC AGGATACTCG CCAGCAGAAT TGATGACTGA TGAAAAATGT
GAGGAAGTTG CTCAGGAGAG TCATTATAAT AGTAGTGATG ACATGTTTGC GGCTCTAGGA
TTTGGTGACT TGGCTCCCGT GGGTATTAGA AATCGTTTTA CTGCTGATAT CCGGCAACAA
GTTGAAAGCG ACCGCCAACA AGCAGCAGAA AAAGCTGTAT TAGAAGATCA TCAGACTCTT
GAAAAGCCGA ATGAACGTGA AAAGCAAAAA CAGGCTAAGG CATCGAGCGA GGGCGTAATT
GTTGAAGGAG TTGACAATCT TCTTGTTCGT TTAAGTCATT GCTGTAGTCC AATCCCTGGA
GATGCTATTA CTGGCTACAT TACCAAGGGA CGAGGAGTGT CAGTTCACCG GGATGATTGC
CCGAATATTA AAGCCGCCCG TAAGAATGGC GAACGAATTG TTAGTGTATA TTGGGCAAAT
CCTAATGGCG ACAGAACAAA CTACAATGCT GACTTGGAAG TTCAGGGATA CAATCGAAAT
GGCTTATTAA ATGATGTTTT ACGTTCAGTA AATAACAGTA CGCGCTTCTT AAATTCAGTT
AACGGAAAAG TTGACCACAA TAAGATGGTG ACAATTAGTT TGATTATCGG AGTGCGTAAT
TTACGGCAGT TACAACTGAT CATGGATGGC TTAAAGAACA TTCCAGATGT TTACGTTGTC
AAAAGAATTA TTCGATAG
|
|---|
| Protein sequence | MSKEKELTHE DVQKMVSSYM NEEHVALVEK AYHFAEVAHH DQRRKSGEPY IIHPIQVAGI
LANLHMDPET VCAGYLHDIV EDTGATLDDI KELFGPTIAM IVDGDTKLGK IRYKSNKEQM
AATHRKLLLA MSKDIRVMIV KLADRLHNMR TLKHLRPDKQ RRISNETLEI YAPIADRLGI
STIKWELEDL SLRYLNPQQY YRIVHLMNSR RDQRVDYIDE SIKLIKKAIA DLDLGPNVEI
YGRPKHIYSV YRKMVTQHKQ FSQIYDLLAV RIVVDSIRDC YAALGAIHTN WKPMPGRFKD
YIAMPKTNGY QSLHTTIIGP EGRPLEVQIR THKMHEIAEY GVAAHWAYKE GKTNGIQQTQ
DSQKLNVVKE ILELRSESQG TDEFMQGIQS DIFTDKVYAF TPKGDVIEMP KGSGPLDMAY
QIHTEVGNHT TGAKVNGRIV PLDYEIKNGD IVDILTSSSS AGPSRDWFDL VSTRRARNKI
RQFFRAHDRE KNIEEGKQLL ENELREAGYS PAELMTDEKC EEVAQESHYN SSDDMFAALG
FGDLAPVGIR NRFTADIRQQ VESDRQQAAE KAVLEDHQTL EKPNEREKQK QAKASSEGVI
VEGVDNLLVR LSHCCSPIPG DAITGYITKG RGVSVHRDDC PNIKAARKNG ERIVSVYWAN
PNGDRTNYNA DLEVQGYNRN GLLNDVLRSV NNSTRFLNSV NGKVDHNKMV TISLIIGVRN
LRQLQLIMDG LKNIPDVYVV KRIIR
|
|---|
| |