| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lreu_0694 |
|---|
| Symbol | polC |
|---|
| ID | 5189546 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Lactobacillus reuteri DSM 20016 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009513 |
|---|
| Strand | + |
|---|
| Start bp | 758970 |
|---|
| End bp | 763301 |
|---|
| Gene Length | 4332 bp |
|---|
| Protein Length | 1443 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 640590528 |
|---|
| Product | DNA polymerase III PolC |
|---|
| Protein accession | YP_001271296 |
|---|
| Protein GI | 148543926 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG2176] DNA polymerase III, alpha subunit (gram-positive type) |
|---|
| TIGRFAM ID | [TIGR00573] exonuclease, DNA polymerase III, epsilon subunit family
[TIGR01405] DNA polymerase III, alpha chain, Gram-positive type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.0739447 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGGATTAA GTCGCCAAGA ATTATTTGGA AAACTATTAG AACAAATTCA CTTTCCAGAA
AAAGACAATT CTGCATTCAG AAATGCCGCA GTTCAATCAG TTGTTGTTCA TAAAAAGTCT
CGGCAATGGG AATTTCACTT AATCTTTAAT AAAGCTTTAC CGTATGACCT ATTTACGCAG
TTCAATCAGA GCTTACAGCT AGGGTTTAAA GATATTGCTA AAGTTAGTTT AAAGATTAGT
ACTCCCATGA CAGAACTTGA TGAATCACAG ATAGCTAATT ATTGGCAGTT CATCATTAAT
AAGGCAATTA GTGATACACC AATGCTCCAA CAAGCTTGCT TACAAACGGC TCCTGAGGTT
AAGGATGGGC GTGTGACGCT GGTTGTCGAA AATGAGGTAA TTAAAGACTT ACTAGCACAG
AAAGCATTAG ATAAGATTGA AAAATCATAC CAAGAGCTAG GATTTCCTAA ATTTAGGATT
CATCCGTTTG TTGACCAGTC AGCCTCGCAA GCAAAAATTG AAGAATTAAA GGCTAAACAC
GAGAAGGCCG ATGCTGCACT TGCTGCCAAG GCGGCTGCCC GGATCAAGAA AAATGAGGCC
GCAAAGAAGA CAGCAAAGAA AAGTGCACCA GTCGCCCCTG CTGATGGCCC AGTCCAACTT
GGCCGGATGA TTGATAGTAA GCAGAATGTT ATTCAAATGA AAGACATTGA GGGGGAAGAA
CGATCCGTAG TTGTTGAAGG ATATGTATTT AATGCAGAAA TTCGCGAACT ACGCTCAGGT
CGTCAATTAT TAACGTTTGA AATTACGGAC TATACTTCTT CTTTTTCTGT CAAGAAGTTC
TCACGTAACA GTGATGAAGA AGCACAATTT GCCAATATCA AAGCAGGAAT GTGGTTGAAA
GTTCGCGGAC CTGTACAAGA AGATACCTGG ATGCGAGACT TGGTAATCAC GGCTTATGAT
GTTAATGAAG TAACTCATAT AGCGCGTCAA GATAAAGCTC CTCAAGATGA TAAACGAGTT
GAACTGCATA CGCATACAAC AATGAGTCAG ATGGATGCCA CTAATTCGAT TACTGAGCTT
GCAACTCGTG CTCATAAGTG GGGACATCCA GCAATTGCGG TAACCGATCA TGGGAATGTC
CAGGCTTTTC CGGAAGCATT TAGCGTGGCC CAAAAAACGG GCATTAAAAT GCTATATGGG
ATGGAAGCTA ATGTTGTTGA TGATGGAATT CCATTGGTAT ATAACGAGAA TCATGAAGAA
CTCGCTCATC AGACCTATGT CATTTTTGAC GTGGAAACGA CAGGGTTATC AGCAATTTAC
GATAAGGTAA TTGAATTATC TGCAGTTAAA ATGCAAGATG GAAATGTCTT AGAACGTTTT
GATGAATTCA TCGATCCTGG TTTCCCGTTA TCAGAACAAA CAACTAATTT AACTAGTATC
ACCACTGAAA TGGTTCAGGG TTCAAAAACT GAAGAAGAAG TTTTTCAGAT GTTTAAGGAC
TTTTGTAAGG GCTGTATCAT TGCTGGTCAT AACGTTTCAT TTGATATGGG TTTTATGAAT
ACTGGCTATG AACGTCATCA AATGGGAAAA ATCGCGGAAC CAGTAATCGA TACATTACCA
CTGGCGCGAT TCTTATATCC TGATATGCGA GGATACCGAT TAAACACACT TAGTAAAAAA
TTTAAGGTAG CATTGGAACA TCACCACCGT GCTAACTATG ATTCGGAAGC TACAGGACAC
TTGCTTTATA AGTTCTTGAA AGATGCTGAA GCCCGTTATG ATGTGAAGTA TGTGGATGAT
TTAAATAAGC ATATGGAAGA AAATAATGCT TACCGTCATG CGCGGCCTTT TCATGTAACG
ATTTTTGCAC AGACCCAGGC TGGCTTGAAA AACTTATTTA AGTTAGTATC ACTATCAAAC
GTTGAATATT TTTACCGGGT ACCGCGAATC CCGCGAACAG TGCTGACGAA ATATCGTGAA
GGACTGCTTT TGGGAACTGC TTGTTCATCG GGAGAAGTAT TTACCGCGAT GATGGAGAAG
GGTTACGATC AAGCACTAGA AAAGGCGCGC TACTATGATT TTATTGAAGT TCAGCCTAAG
CCAAACTATG CACCGTTGCT TGAACAACAC GTGATTGCAG ATGAAGGTCA CCTCGAAGAT
ATCCTCAAAA ATATGGTCAA ACTGGGGGAT GAGTTGGAAA AAACAGTGGT TGCCACTGGA
GATGTCCATT ACCTTGATCC ACATGATGGA ATTTACCGTA AGATCCTGAT TAACTCGCAA
GGTGGTGCAA ACCCGTTAAA TCGAACTGAG CGTCCAGAAG TTCACTTTAG AACGACTGAT
GAAATGCTAA ATGAATTTGC TTTTCTCGGT GAAGAAAAAG CCCACGAATT AGTTGTGGAA
AATAGTAATA AGATAGCAGC TGAGATTGAT GACAATATTC GGCCGGTAAA AGATAAACTT
TATCCACCGC ATATGAAGGG GGCCGAACAG GAAATCCAAG ATCGGACATG GAATACTGCG
AGAAAATGGT ATGGTGATCC TTTGCCACAA CTAGTTCAGG ACCGGATTGA ATTAGAGTTG
AACAGTATTG TTAAGAACGG TTTCTCTGTT CACTATTTAA TTGCCCAACG ACTAGTAGCT
AAGTCCAATA AAGATGGATA CTTAGTAGGT TCGCGGGGAT CTGTTGGTTC AAGTGTGGTT
GCAACGCTTT CGGGAATTAC AGAAGTTAAC CCGTTGCCAC CACATTACCG TTGTCCAAAT
TGTCAATTTA CCCACTTCTA TACACAAGGG GAATATAGTT CAGGTTTCGA TTTGCCAGAT
AAAAAATGTC CAAAGTGTGG CACTCTAATG GTAAAAGACG GTCATGATAT TCCATTCCAA
ACTTTCCTTG GATTTAAGGG GAATAAGGTG CCGGATATTG ATTTAAACTT CTCCGGTGAC
TACCAGCCAA TTGCCCATAA CTATATGAAA GTTTTATTCG GTGAAAAAAA TGTATTCCGT
GCCGGGACGA TTGGTACGGT TGCCGATAAA ACTGCATATG GATATGTGAA AGCTTACGAA
CGAGATACAG AAAAGGAATT TAGAAAGGCA GAGGAGGATC GCTTAGCAAA AGGAGCTACA
GGTGTTAAGC GAACTACTGG TCAGCACCCA GCGGGAATTA TTATTGTCCC TGATGATATG
GATATTTATG ACTTTACACC TGTACAGTAT CCTGCTGATG ACCAAACAGC TGCCTGGGAA
ACAACTCACT TTGATTTCCA CTCGATTCAC GATAATATTC TTAAAATGGA TATTTTGGGG
CATGATGATC CAACGATGAT TCGTGCCTTA CAAGACCTAT CAGGAATTGA TCCTCAATCG
ATTCCAATGG ATGATCCAGG GGTGATGGCC TTATTCTCTA GTCCTAAGGT ATTGGGTGTA
ACTGAAGAAC AAATTCAAAG TAAAACTGGT ACACTAGGAT TGCCGGAATT CGGGACGCGA
TTTGTCCGGG GAATGCTGGA GGATACTCAT CCGAAAAACT ACTCGCAATT ACTACAAATT
TCTGGTCTTT CACATGGAAC TGGGGTGTGG CTAGATAATG CCCAGGAACT AATCAAACAG
GGAATTGCCA CTATCGCTAA TGTGATTGGT TGTCGTGATA ACATCATGAC CGACTTAATC
CACTATGGAA TGGACTCAGA AATTTCTTTC CAAATTATGG AACACGTACG GAAAGGTCGC
GGAATTCCAG ACGAGTGGCA AGAAAAGATG CATGAAGCTA ATGTTCCACA ATGGTATATG
GATTCATGTT TGAAGATCAA GTACATGTTC CCGCGGGCGC ACGCGGCTGC TTATGTTTTG
ATGGCTCTGC GAATTGCTTA CTTTAAGGTT TACTTCCCGT TAGTTTATTA TTGTGCATTC
TTCTCTGTGC GCGCAGATGA CTTTGATGTA GTTGCGATGT CTCACGGTAA AGATGCGGTT
AAGCAACGGA TGAAAGAAAT CAATGATAAG GGAAACGATG CTAGTGCAAA AGAGAAGAAT
CTCTTAACAA TCCTTGAACT AGCTAATGAG ATGCTGGAAC GGGGCTTCAA ATTTAAGATG
GTTGATATTG AAAAATCAGA TGCCTCCGAT TGGTTGATTG ATGGTGATTC ATTAATTGCA
CCATTCCGAG CAGTTCCTGG ATTAGGACTA AACGTTGCTA AGCAAATTGT TGCCGCACGT
GAAGAACGGC CATTCCTTTC TAAAGAAGAT TTGGCAGAGC GCGGGAAGGT TTCGCAGACG
CTGATTGATT TCCTCACCGA TAATCATGTA TTAGATAAGC TGCCTGACGA AAATCAACTT
AGCTTGTTTT AA
|
|---|
| Protein sequence | MGLSRQELFG KLLEQIHFPE KDNSAFRNAA VQSVVVHKKS RQWEFHLIFN KALPYDLFTQ
FNQSLQLGFK DIAKVSLKIS TPMTELDESQ IANYWQFIIN KAISDTPMLQ QACLQTAPEV
KDGRVTLVVE NEVIKDLLAQ KALDKIEKSY QELGFPKFRI HPFVDQSASQ AKIEELKAKH
EKADAALAAK AAARIKKNEA AKKTAKKSAP VAPADGPVQL GRMIDSKQNV IQMKDIEGEE
RSVVVEGYVF NAEIRELRSG RQLLTFEITD YTSSFSVKKF SRNSDEEAQF ANIKAGMWLK
VRGPVQEDTW MRDLVITAYD VNEVTHIARQ DKAPQDDKRV ELHTHTTMSQ MDATNSITEL
ATRAHKWGHP AIAVTDHGNV QAFPEAFSVA QKTGIKMLYG MEANVVDDGI PLVYNENHEE
LAHQTYVIFD VETTGLSAIY DKVIELSAVK MQDGNVLERF DEFIDPGFPL SEQTTNLTSI
TTEMVQGSKT EEEVFQMFKD FCKGCIIAGH NVSFDMGFMN TGYERHQMGK IAEPVIDTLP
LARFLYPDMR GYRLNTLSKK FKVALEHHHR ANYDSEATGH LLYKFLKDAE ARYDVKYVDD
LNKHMEENNA YRHARPFHVT IFAQTQAGLK NLFKLVSLSN VEYFYRVPRI PRTVLTKYRE
GLLLGTACSS GEVFTAMMEK GYDQALEKAR YYDFIEVQPK PNYAPLLEQH VIADEGHLED
ILKNMVKLGD ELEKTVVATG DVHYLDPHDG IYRKILINSQ GGANPLNRTE RPEVHFRTTD
EMLNEFAFLG EEKAHELVVE NSNKIAAEID DNIRPVKDKL YPPHMKGAEQ EIQDRTWNTA
RKWYGDPLPQ LVQDRIELEL NSIVKNGFSV HYLIAQRLVA KSNKDGYLVG SRGSVGSSVV
ATLSGITEVN PLPPHYRCPN CQFTHFYTQG EYSSGFDLPD KKCPKCGTLM VKDGHDIPFQ
TFLGFKGNKV PDIDLNFSGD YQPIAHNYMK VLFGEKNVFR AGTIGTVADK TAYGYVKAYE
RDTEKEFRKA EEDRLAKGAT GVKRTTGQHP AGIIIVPDDM DIYDFTPVQY PADDQTAAWE
TTHFDFHSIH DNILKMDILG HDDPTMIRAL QDLSGIDPQS IPMDDPGVMA LFSSPKVLGV
TEEQIQSKTG TLGLPEFGTR FVRGMLEDTH PKNYSQLLQI SGLSHGTGVW LDNAQELIKQ
GIATIANVIG CRDNIMTDLI HYGMDSEISF QIMEHVRKGR GIPDEWQEKM HEANVPQWYM
DSCLKIKYMF PRAHAAAYVL MALRIAYFKV YFPLVYYCAF FSVRADDFDV VAMSHGKDAV
KQRMKEINDK GNDASAKEKN LLTILELANE MLERGFKFKM VDIEKSDASD WLIDGDSLIA
PFRAVPGLGL NVAKQIVAAR EERPFLSKED LAERGKVSQT LIDFLTDNHV LDKLPDENQL
SLF
|
|---|
| |