| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lreu_0672 |
|---|
| Symbol | |
|---|
| ID | 5188324 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Lactobacillus reuteri DSM 20016 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009513 |
|---|
| Strand | + |
|---|
| Start bp | 738741 |
|---|
| End bp | 740261 |
|---|
| Gene Length | 1521 bp |
|---|
| Protein Length | 506 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 640590505 |
|---|
| Product | HK97 family phage major capsid protein |
|---|
| Protein accession | YP_001271274 |
|---|
| Protein GI | 148543904 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3740] Phage head maturation protease |
|---|
| TIGRFAM ID | [TIGR01543] phage prohead protease, HK97 family
[TIGR01554] phage major capsid protein, HK97 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAGAAAC GACTAACAAC TAACGCAGGT TTACAAACGG TAAGCCCTAA AGAAGACCCA
ACAAAAGACC AGCAAGACAA CCAAGATGAA ACGCAAGCCT CACAGCCTAA TACAGTTGAA
GGCTATGCGT TACTCTTTAA TCAACCCAGC AAGGACTTAG GCGGTTTTGT TGAAGTGATT
GACCCTAGCG CCCTTGATAA CGTAGACCTA TCCAATGTAG TTATGCTTGA TCAACACGAC
TACACTAAGC CACTAGCAAG CGTTAAGGCT GGTTCATTAC AACTTGATGT GGACGATAAG
GGGCTTCACT TCAAGGCAAC TATTGATCCA AGTGTAAGTT ACGCAAGTGA CACTCTTAAT
AATGTTAAGA ATGGGAACAT TAATTCTATG TCTTTCCGTT TTGATGTTGA TGATGGTTCT
GACAGTTGGA CACGTGACGA CAACGGACAA ATTACACGCA CCGTTAATCA GATTAAAGAT
TTATTTGAGG TTTCAACCGT TACAGTGCCT TCATATGATC AGACAAATGT TGATGTAGAT
AAAACAAGCA TTCGTAGTTA CAACCAATTT ATCGAAAGTG AGGAACATAA TAAAATGCAA
CACACAATCT TAGACCCCAA AAACAATACA GAACAACCAG CTAACGCCTT TGAAAGCTTC
ATTCGTTCAC GTGGTGAAAC CCGTGACGGA TTAACAACTA AGGGGGCAGA AGCTGTTATC
CCAGAAGAAG TTGTTACTCC AGTCCTAGAC TTAAAGAACA GTGCTTATAA CTTAGCGAAG
TACGCTACTG TAAAGACTGT AGGGACTGGT TCCGGTCATT ATCCAATCGC TACCCGTTAC
AACACAGCGG TACTTACTAC TAAGGAAGAA CAAGCAGAAA TTGCTGATGT AGACGCTAAT
ATGTTTGAAG ATGTGAAGTT TGATGTAAAG ACCCGTGCCG GTAAGATTGC ACTATCAAAT
GAAGTTGTTG ACGATTCAGA AGTTGATATT GTATCTGAAG TAAAGAACCA ACTTCAAAAG
TTAGTTGATA ACACTGATAA CGCTGAAATT ATCAAGGTAT TACAAGGCGA TAACTTTACT
AAGAAAACCG TAGCTAATGT TGATGACTTG AAGCAAGTAT TCAACGTTGA CCTTGACCCA
GCCTTACAAA GTACTTCTAC ATGGTTAGTA AATCAATCAG CTTTCCAAGT ATTAGATACT
TTGAAAGACA ATGAAGGACG TTACTTATTA CAACCAGATG TAACCGCTCC TAGTGGATTT
TCTTTACTTG GTCAACCCGT TGTTAAGATT AGTAATAAGT TCTTACCAGA TAACACGGAC
GGTTCACATC CAATGATTTT AGGTGATATT TCAGAAGCGG TAGCAGTATT CCGGCGTAAT
CAAGTTACAG CCCAATGGGA CAAGTTCGAT AGTTACAGTC AAGGCTTATC TGTTATCGTC
CGTAACGACT ACCAACCAAT TAGTAATGAC GCTGCTTTCA ATCTCTCTTT AACCACAACT
AAGGCAACCG AAAGTAAATA A
|
|---|
| Protein sequence | MEKRLTTNAG LQTVSPKEDP TKDQQDNQDE TQASQPNTVE GYALLFNQPS KDLGGFVEVI
DPSALDNVDL SNVVMLDQHD YTKPLASVKA GSLQLDVDDK GLHFKATIDP SVSYASDTLN
NVKNGNINSM SFRFDVDDGS DSWTRDDNGQ ITRTVNQIKD LFEVSTVTVP SYDQTNVDVD
KTSIRSYNQF IESEEHNKMQ HTILDPKNNT EQPANAFESF IRSRGETRDG LTTKGAEAVI
PEEVVTPVLD LKNSAYNLAK YATVKTVGTG SGHYPIATRY NTAVLTTKEE QAEIADVDAN
MFEDVKFDVK TRAGKIALSN EVVDDSEVDI VSEVKNQLQK LVDNTDNAEI IKVLQGDNFT
KKTVANVDDL KQVFNVDLDP ALQSTSTWLV NQSAFQVLDT LKDNEGRYLL QPDVTAPSGF
SLLGQPVVKI SNKFLPDNTD GSHPMILGDI SEAVAVFRRN QVTAQWDKFD SYSQGLSVIV
RNDYQPISND AAFNLSLTTT KATESK
|
|---|
| |