Gene Lreu_0630 details

Gene Information

• Locus tag: Lreu_0630
• Symbol: def
• ID: 5189677
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Lactobacillus reuteri DSM 20016
• Kingdom: Bacteria
• Replicon accession: NC_009513
• Strand: -
• Start bp: 698419
• End bp: 698979
• Gene Length: 561 bp
• Protein Length: 186 aa
• Translation table: 11
• GC content: 40%
• IMG OID: 640590463
• Product: peptide deformylase
• Protein accession: YP_001271232
• Protein GI: 148543862
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0242] N-formylmethionyl-tRNA deformylase
• TIGRFAM ID: [TIGR00079] peptide deformylase

Plasmid Coverage information

• Num covering plasmid clones: 5
• Plasmid unclonability p-value: 0.0000000231899
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTATTTAA TGAAAGATAT TACCCGTGAC GGCAATCCCG TTTTACGTAA ACGAGCTGCT 
AAGGTCTCAT TCCCCCTATC TGATGAAGAC CAAAAATTAG CTAAAGATAT GATGAAATAC 
TTAGAAGTAA GTCAAGATCC TGAATTATGT AAAAAATACA AGTTACGAGC TGGCGTTGGC 
CTTGCTGCTC CTCAAGTTGG TGTTTCAAAG CAAATGGCTG CTGTCCTTGT TCCTGCACCT 
GATGAAGATG AAAAGCCCTT ATTTAAGGAC GTTATTATTA ATCCAGTAAT CGTCAGTGAA 
TCGGTTCAAT ATGGTGCTCT TACTGAAGGT GAAGGTTGTC TTTCAGTTGA CAAAGATGTA 
CCTGGCTACG TGCCACGACA TGACCGCATC ACATTACGTT ATCAAGACGT TAATGGTGAA 
ACGCATAAGG TACGATTAAA GCATTACCCA GCAATTGTTT GTCAGCATGA AATTGACCAT 
TTGCATGGGG TACTATTTTA CGATCATATT AATAAAGATC AACCATTTGA GGCGCCTGCA 
GATACAGTGA TGATTAGTTA A 

 

Protein sequence

MYLMKDITRD GNPVLRKRAA KVSFPLSDED QKLAKDMMKY LEVSQDPELC KKYKLRAGVG 
LAAPQVGVSK QMAAVLVPAP DEDEKPLFKD VIINPVIVSE SVQYGALTEG EGCLSVDKDV 
PGYVPRHDRI TLRYQDVNGE THKVRLKHYP AIVCQHEIDH LHGVLFYDHI NKDQPFEAPA 
DTVMIS