Gene Lreu_0607 details

Gene Information

• Locus tag: Lreu_0607
• ID: 5188984
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Lactobacillus reuteri DSM 20016
• Kingdom: Bacteria
• Replicon accession: NC_009513
• Strand: +
• Start bp: 675292
• End bp: 675975
• Gene Length: 684 bp
• Protein Length: 227 aa
• Translation table: 11
• GC content: 36%
• IMG OID: 640590442
• Product: TPR repeat-containing protein
• Protein accession: YP_001271211
• Protein GI: 148543841
• COG category: [S] Function unknown
• COG ID: [COG4700] Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats

Plasmid Coverage information

• Num covering plasmid clones: 57
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACAGAGA AAAAAGATTT TCGTGATCCT AAGAAAAAGG AAACAGAAAA ATTAGTTCAT 
AAACTAGTTG AAGCAATTGA TGAGCATCCA GATAAAGTAA ATAATTATTA TGATTTAGGT 
TCTTTGCTAA CCCGGTTAAA TGACTATCAA CAAGCAGAAG AACTCTTTAT GAAGGCTTTG 
GGGATTTTTG AGGCAAAGGG TGACAAGGAT GCTATGAACC TCTTAAACTA TGGTCTTGGT 
AACCTTTACT ATGAGATTGG CAAAGTTAAC GAAGCAATTA AGCTTTATAA TAAGATTGAT 
GACTCCAAAC TCAAAGCTGA TTCTTATCTT ATGTTAGCCC AAAGCTATAT GAAAAAAGGA 
CAATACAAGC AAGCTGTTGC TTATGGATTA ACTGCCCTTG AATTACGTCC AGATGATCCT 
GAAATTAATC AGGTAATCGG TGACTCATTA TTAGCATTAG GCGAATTTAA ACAGGCTAAA 
GCTTACTATG ATGCAATTCT AAAGTATCAT CCAGGACGTG CTGATACACA ATTTAATCGC 
GGAATTGTAG CGATGGTTCT TGGTGAGCCA TACAAAGACT ACCTTGCGCA AGCTAAGCAG 
TTAGATCCTA ATTACTACCA TAAGAGTGAG CAACGACTTA ATGATATTGA AAAAACGCTT 
CAGGCAACGC AAAAGAAAGA TTAG 

 

Protein sequence

MTEKKDFRDP KKKETEKLVH KLVEAIDEHP DKVNNYYDLG SLLTRLNDYQ QAEELFMKAL 
GIFEAKGDKD AMNLLNYGLG NLYYEIGKVN EAIKLYNKID DSKLKADSYL MLAQSYMKKG 
QYKQAVAYGL TALELRPDDP EINQVIGDSL LALGEFKQAK AYYDAILKYH PGRADTQFNR 
GIVAMVLGEP YKDYLAQAKQ LDPNYYHKSE QRLNDIEKTL QATQKKD