| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lreu_0394 |
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| Symbol | |
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| ID | 5189490 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Lactobacillus reuteri DSM 20016 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009513 |
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| Strand | + |
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| Start bp | 447553 |
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| End bp | 449958 |
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| Gene Length | 2406 bp |
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| Protein Length | 801 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 640590199 |
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| Product | ribonuclease R |
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| Protein accession | YP_001271000 |
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| Protein GI | 148543630 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.00157968 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACAACAA ATAATTTAAA AGAAAAAATA TTAACACATT TAACAGATAA TGCAGGTGTG
AGTTACTCAG CAGAAAAACT TGCTCATCAA TTAGGAATGG ATGATGCTGA GCAGTTTACA
CCGATCGTTC AATCTCTTGC TCAATTGGAA AGAGAGAAAA AGGTTCAAGT AACTGATCGT
GGTGAATTCG AAGCAGTTAT TAAACAGCAA CCACTTATTG GAACTTTCCA TGGTAATGAT
AAGGGATTTG GTTTTGTAGA CTATGACCCG GATCTTCCAG ACATGTATAT TAATCCTGAT
CACACTTTGT ATGCATTAAA TGGGGACCAG GTAGAAGTTA AAGTATTACG TCCAGCAAAA
GCAGGTAGTG ATCAGGGTCC AGAAGGTCAA GTAACCCGGA TTGTTGAACA TAAATATGAA
AATGTAGTTG GTGAATTTAA GCAAGCGACT ATCGGCGATG ATTACATTGG TGAAATTTTG
CTTAAAGATA AGAAATTATC GCAGTATCAT TTCTATGTAA CGGACAAGGG ATTAAAACCA
CTTGACGGCC AAGTAGTAAC AGCTACTGTT GAGACTTATC CTAGTGATGA GGCACCGGAA
GTAATGACGG GTGCCGTTAC TGAAGTGATT GGTGATAAGG ATGAGCCGGG TATTGATATT
ATGTCAGTAA TCTATGCTCA CGATGTCCCT CATGAATTCC CTAAAGAAGT GATGGAACAA
GCTAATAAGA TTCCGCTTCA TGTTCTCCCA GAAGAAAAAA AGGGTCGGGT GGATATTACT
GACCAACCAC TTGTTACCAT TGATGCAATT GAATCAAAAG ACTTGGATGA TGCGGTGGTA
GCTTGGAAGA TGGATAATGG GCACTACCAC CTTGGGGTTC ATATTGCTGA TGTTACTCAC
TATGTAAAGC CAGGTACACC GCTTGATCAA GAAGCATTTA AGCGTGGTAC ATCTGTTTAT
CTAACTGATC GGGTAGTTCC AATGCTTCCT AAGCGGCTTT CTAATGGAAT TTGCTCTTTA
AATCCTAATG AAGAACGTCT TGCTATGAGT TGTGAAATGG AAATTGATGA GCAAGGAAAG
ATCGTTAATC ACCGAATCTT CCAAAGTGTT ATGAAATCAC ATGCCCGAAT GACTTATAAA
GCAGTTAATA AGATTCTGGA GTCGCATGAT GCTAAAACGA TGAAACAATA TGAAGACCTC
GTTCCAATGT TTGAAACAAT GGGCGAGATT CACAAATTAT TGCTTAAAAA TCGGAAAAAA
CGTGGTGCTA TTGACTTTGA AGCTCCTGAA GCAAAGATTA TTGTGGATGA AAAGGGGCAC
CCAACTGATA TTCAACTACG GAATCGAGGA CTTTCTGAAC GGATGATTGA ATCCTTTATG
TTAGCTGCTA ATGAAACAGT TGCTGAACAC TACTTCAAAG AACGTGTTCC ATTCCTTTAT
CGGATCCACG AGACACCAGA TAGTGACCGG ATTAAGTCAT TTGTGGACTT TTTGGCTGTG
TTTGGGATTG ATGTTCATGG TGATATTAAA AATGTTAAAC CAGGGATGCT TCAAAAAGTA
TTAAAGGATG TGGCTGGTAC TCCTGAAGAG CAAATGGTCC AAGTGATGAT GTTACGTAGT
ATGCAACAAG CTAAATACTC GGATGAAGAG CTAGGTCACT TTGGTTTAGG CGCTAAATAC
TACACACACT TTACTTCACC AATTCGGCGA TACCCTGATG ATACAGTTCA CCGCTTGATT
AAGTGGTACG AAGAACATGG TAAAAACGAA CCAGCTAAGG ATCATTGGCG TGACAAGCTT
CCTGAAATTG CTGAACATAC TTCCGTTACC GAACGACGGG GAATTGATAC AGAACGTGAT
GTTGACAGTA TGAAGAAAGC CGAATACATG GAAGATCATG TTGGTGAAAC CTTTGATGCC
GTCGTAAGTT CAGTAATGAA GTTTGGTTTG TTCGTTGAAT TACCAAATAC AGTTGAAGGG
TTAGTTCATA TTAGCGTCAT GAAGGATGAT TATTATGAAT ATTCAGAAAA ACACATGGCT
CTAATCGGAC GAAACTCTCA TCGAATTTTC CAAATGGGGC AACCAATTAA GGTTAAGTTA
GTTCGAGCAG ATAAAGATCT TCGTGAAGTT GACTTTGAAA TTGTTAACCC TGAAGAGGCA
CCAAAGACAA AGATTCGGGT TCCACGTAAT GATGAGTATC GTGGTCGAGG TCGTGGTCGC
AAGGGACGTA CCAATAATAA TTCCCGTCAT GAGAATAATA ATGGTAACTA TTACCGTAAT
ACTCAAGGAA AATGGCGTCG CACTCATCAA GAAAACGGAC ATCAAAATAA TCGTCAAATA
AATCGGGGAC AAACTCGTCA CCACAATAAT TCACGTGATC ATGAAGGCGT TCGTCGCCAC
CATTAA
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| Protein sequence | MTTNNLKEKI LTHLTDNAGV SYSAEKLAHQ LGMDDAEQFT PIVQSLAQLE REKKVQVTDR
GEFEAVIKQQ PLIGTFHGND KGFGFVDYDP DLPDMYINPD HTLYALNGDQ VEVKVLRPAK
AGSDQGPEGQ VTRIVEHKYE NVVGEFKQAT IGDDYIGEIL LKDKKLSQYH FYVTDKGLKP
LDGQVVTATV ETYPSDEAPE VMTGAVTEVI GDKDEPGIDI MSVIYAHDVP HEFPKEVMEQ
ANKIPLHVLP EEKKGRVDIT DQPLVTIDAI ESKDLDDAVV AWKMDNGHYH LGVHIADVTH
YVKPGTPLDQ EAFKRGTSVY LTDRVVPMLP KRLSNGICSL NPNEERLAMS CEMEIDEQGK
IVNHRIFQSV MKSHARMTYK AVNKILESHD AKTMKQYEDL VPMFETMGEI HKLLLKNRKK
RGAIDFEAPE AKIIVDEKGH PTDIQLRNRG LSERMIESFM LAANETVAEH YFKERVPFLY
RIHETPDSDR IKSFVDFLAV FGIDVHGDIK NVKPGMLQKV LKDVAGTPEE QMVQVMMLRS
MQQAKYSDEE LGHFGLGAKY YTHFTSPIRR YPDDTVHRLI KWYEEHGKNE PAKDHWRDKL
PEIAEHTSVT ERRGIDTERD VDSMKKAEYM EDHVGETFDA VVSSVMKFGL FVELPNTVEG
LVHISVMKDD YYEYSEKHMA LIGRNSHRIF QMGQPIKVKL VRADKDLREV DFEIVNPEEA
PKTKIRVPRN DEYRGRGRGR KGRTNNNSRH ENNNGNYYRN TQGKWRRTHQ ENGHQNNRQI
NRGQTRHHNN SRDHEGVRRH H
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