| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lreu_0262 |
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| Symbol | |
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| ID | 5188946 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Lactobacillus reuteri DSM 20016 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009513 |
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| Strand | + |
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| Start bp | 298098 |
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| End bp | 301637 |
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| Gene Length | 3540 bp |
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| Protein Length | 1179 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 640590058 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_001270869 |
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| Protein GI | 148543499 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGTGCAAA TAGAAAATTT AATCGAGAAG ACGCCATCAT TTAAACAAAT TACGGCTGAC
CTCCAACCCA AGAACCATCA ATTGATAACG GGAATTTCTG GATCAGCGCG AACTGAATTG
CTAAGTGCTC TTTCTAAAGA AGGGCAGCGA CCAATTTTAG TAGTGACCGA CACAATTTCC
CATATGCAGG AATTAGCTAG TGATTTAGAG AACCTTCTTC CTGCCAATCG TGTTTATCAG
TTTCCGGTTG AAGAGGTTTT AGCAGCGGAA GTAGCAACTA GTTCTCCTAA CTATCGTCTT
CAACGGGTAC TGGCCTTAAA TGCGTTGATT AATAACGAAC CGGCAGTTGT AGTTGCGTCT
GCTGCGGGGT TACGGCGCAA TATTATTTCA CCAGAATACT TTGCTCAGTC CTCGTTAAAG
ATTAAGACTG GCGGGGAAGT GGATCCAGTA AAAATTCGGC AACAATTAAG CGCAATGGGG
TACCAATATC AAAAAATGGT CTTGCGTCCT GGTGATTTTG CGATTCGTGG ATCGATTATT
GATATCTATG CCTTAAATAC TGATAATCCG GTTAGAATTG ATCTTTTTGA TACAGAAGTT
GATTCACTTC GGTATTTTGA TGCTAGTACC CAACGGAGTA TTGATAATGT TGAAGAAGTT
CAGATACTGC CAGCGACAGA CTTTATTATC CCAGCGACAG AATTTTCGCG GGTGTATGAA
GCCCTTGATA CTGAATACAA AAAGGTAGTG AAGGAGTTAA GTGCTGACGA TGCTGATATT
AAACAGCAGG TGGCTAACCG CTTTGAACCA TTATTGAACG CGCTTAAGAA CCAGCATTTG
CCTAATGAAC TTTTAGAATT TAGCAACCTA GTTTATCCGA CAAAGCATTC CTTATTTGAT
TATCTTCCTG ATGATGGGAC AATTTACTTT GATGACTTGA CGCGGATAAA GCAATTTGCC
AAGCAGATGA CCCAGGAAGA TGCAGGCTGG TTTAAAGATA AGGTTGCTCA CCATCAATTA
ACGGATGTTC CAGATCTTAG CAATGACGTA TCGACCATAA TAAAAAAAGA CCTGCATCCG
CAAATTTATG GCGCCCTATT TAAAAAAGGT CTCGGTAATA TTAAACTTAG CCAAATTACT
GACCTAAAAA GCAGAACCAT GCAACGTTTC TTTGGGCAAA TGCCACTACT GAAAGCTGAA
CTTCAACGGT GGATTGATCA AGGGCAAACG GTAATCCTGA TGGCTAATAG TCCAGAACGA
CGAAAGCAAA TTGCCCAAAC GCTTGCTGAC TTTGATATCA CCGCAACAGA AACTGAATTA
ACAAATATCA AGCCGAATGT TGTGCAAATT GTTGCTGCTA ACTTAAACAA TGGGTTTGAA
ATGCCGCTTG CTGGGCTGGT GGTTATTACA GAAAGCGAGA TGTTTAAGCA GGTAAAAAGG
GTTCATCATC GTCCACAAAA ACTTGCCAAT GCCGAACGGT TAAAAAATTA TACTGACCTT
AAACCGGGTG ACTATGTAGT TCATGTCAAT CATGGAATTG GGATTTTTAG TGGAATTAAG
ACGATGGAAG TTGACCATGT TCACCAAGAC TACATGATCA TCAATTACCG AGATAACGCT
CAGATATATG TTCCAGTAAC CCAGCTAAAC CTTGTCCAAA AGTATGTATC ATCAGAATCT
AAGACCCCGC ATATCAACAA GCTTGGCGGT AACGAATGGG CAAAGACTAA GCGACGCGTT
TCTTCAAAAA TTGAAGATAT CGCTGATGAA TTAGTTGACT TATATGCTAA GCGAGAAGCG
GAGAAGGGGT ATGCTTTTCC GAAAGACGAT TATCTCCAAA AACAATTTGA TGCTAATTTC
CCATATAATG AGACTCGTGA TCAGTTGCGG AGTATTGATG AAATTAAAGA GGATATGGAA
AAGCCAAAGC CGATGGATCG ACTATTGGTG GGGGATGTCG GCTATGGTAA AACCGAAGTT
GCAATGCGGG CAATTTTTAA GGCAGTCACT GGAGGAAAGC AGGTTGCCTT CCTTGTACCA
ACAACTGTTC TTGCCCAGCA ACATTACAAC ACCCTCATGC GCCGGTTTGA AGGCTTCCCA
ATCAACATTG CCTTAATGTC ACGTTTCAAG ACGCCGAAAG AGCTAAAAGA GACAGAAGCA
GGATTAAAGG ATGGAAGCGT CGATGTTGTT GTTGGGACCC ACCGAATCCT ATCAAAGGAT
GTTGAGTTTA AGGATCTTGG GCTGTTAATT GTTGATGAGG AACAGCGCTT TGGGGTTAAG
CACAAGGAAA AACTAAAGCA ATTAAAAAAT AATGTTGATG TTTTAACCTT AACGGCAACC
CCGATCCCCC GGACATTACA CATGTCAATG CTGGGTGTAC GAGATTTATC AGTCCTTGAA
ACACCGCCAG CTGGTCGTTA CCCAATCCAA ACCTATGTAA TGGAGCAAAA TAGTAGTGCG
ATTCGCGATG GGATTATTCG TGAAATGCAA CGCGGCGGAC AGGTTTATTA CCTTCATAAT
CGTGTTCATG ACATTGAAGA GACAGTGGCA TGGTTACAAG AACTTGTTCC TGAAGCCCGG
ATTGGCTATA TTAATGGTCA GATGAGTGAA AATGAACTGG AGACAGTCCT CTATGAGTTT
ATTCAAGGAA ATTATGATGT ATTAGTGACT ACCTCGATTA TTGAAACGGG GGTTGATATC
CCGAATGCGA ATACCCTCTT TGTTGAAAAT GCTGATCGGA TGGGGTTAGC ACAGCTATAT
CAGATTCGCG GACGGATTGG CCGTAGTAAT CGGGTGGCTT ATGCTTACTT TATGTATCAG
CCTAATAAGG TCCTAACCGA ATTAGGAGAA AAGCGGCTAG CTGCAATTCG TGATTTTACC
GAGTTGGGGT CTGGATTTAA GATTGCGATG CGGGATCTTG CTATTCGGGG AGCTGGTAAC
CTTTTGGGAA AACAACAACA TGGGTTTATC GATTCTGTTG GTTATGACCT ATATTCGGCG
ATGCTTAGTG ATGCGGTAGC TAAAAAGCAG GGTAAGAAGC AAACTATTCA CTCCGATGCC
GAAGTTGAGT TAGGGGTTGA AGCTTACCTG CCAACGGATT ATATTGCAGA TCAACGGCAA
AAGATTGAAT TATATAAGAC AATTCGCCAA GCTAAGACGG ATGAAGAAAT TATTGATATT
CAAGGTGACT TGATTGATCG GTTTGGTGAT TATCCAGCAC CGGTTGGGAC GCTGTTGCTT
GTGAGCCAAT TGAAGAATCA TGCTGACCTG GCAATGATTG CTGAAATTAA ACGGCAACGG
GATAATATTA ATATTAAATT TACCGAACGT GCTAGCCGCT TAATTAAAGC CCCTGCAATA
ATTAAGGAGA TAGCTAATAC GCGGTTTAAA GCGACGATTG GTGAAGATAA TCAGCAACTA
ACGATTCGGC TGGTTATTCA ACCTAAAATG ACTACTGATG ATTGGCTTCA CCAGCTACTA
CAATTTGTAA CGGCTTTAGG AAATGTTATG CAAGCCGATG AAAAAGGAGC GGAAAAATGA
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| Protein sequence | MVQIENLIEK TPSFKQITAD LQPKNHQLIT GISGSARTEL LSALSKEGQR PILVVTDTIS
HMQELASDLE NLLPANRVYQ FPVEEVLAAE VATSSPNYRL QRVLALNALI NNEPAVVVAS
AAGLRRNIIS PEYFAQSSLK IKTGGEVDPV KIRQQLSAMG YQYQKMVLRP GDFAIRGSII
DIYALNTDNP VRIDLFDTEV DSLRYFDAST QRSIDNVEEV QILPATDFII PATEFSRVYE
ALDTEYKKVV KELSADDADI KQQVANRFEP LLNALKNQHL PNELLEFSNL VYPTKHSLFD
YLPDDGTIYF DDLTRIKQFA KQMTQEDAGW FKDKVAHHQL TDVPDLSNDV STIIKKDLHP
QIYGALFKKG LGNIKLSQIT DLKSRTMQRF FGQMPLLKAE LQRWIDQGQT VILMANSPER
RKQIAQTLAD FDITATETEL TNIKPNVVQI VAANLNNGFE MPLAGLVVIT ESEMFKQVKR
VHHRPQKLAN AERLKNYTDL KPGDYVVHVN HGIGIFSGIK TMEVDHVHQD YMIINYRDNA
QIYVPVTQLN LVQKYVSSES KTPHINKLGG NEWAKTKRRV SSKIEDIADE LVDLYAKREA
EKGYAFPKDD YLQKQFDANF PYNETRDQLR SIDEIKEDME KPKPMDRLLV GDVGYGKTEV
AMRAIFKAVT GGKQVAFLVP TTVLAQQHYN TLMRRFEGFP INIALMSRFK TPKELKETEA
GLKDGSVDVV VGTHRILSKD VEFKDLGLLI VDEEQRFGVK HKEKLKQLKN NVDVLTLTAT
PIPRTLHMSM LGVRDLSVLE TPPAGRYPIQ TYVMEQNSSA IRDGIIREMQ RGGQVYYLHN
RVHDIEETVA WLQELVPEAR IGYINGQMSE NELETVLYEF IQGNYDVLVT TSIIETGVDI
PNANTLFVEN ADRMGLAQLY QIRGRIGRSN RVAYAYFMYQ PNKVLTELGE KRLAAIRDFT
ELGSGFKIAM RDLAIRGAGN LLGKQQHGFI DSVGYDLYSA MLSDAVAKKQ GKKQTIHSDA
EVELGVEAYL PTDYIADQRQ KIELYKTIRQ AKTDEEIIDI QGDLIDRFGD YPAPVGTLLL
VSQLKNHADL AMIAEIKRQR DNINIKFTER ASRLIKAPAI IKEIANTRFK ATIGEDNQQL
TIRLVIQPKM TTDDWLHQLL QFVTALGNVM QADEKGAEK
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