| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lreu_0190 |
|---|
| Symbol | |
|---|
| ID | 5189845 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Lactobacillus reuteri DSM 20016 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009513 |
|---|
| Strand | - |
|---|
| Start bp | 222868 |
|---|
| End bp | 224013 |
|---|
| Gene Length | 1146 bp |
|---|
| Protein Length | 381 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 640589985 |
|---|
| Product | succinyl-diaminopimelate desuccinylase |
|---|
| Protein accession | YP_001270797 |
|---|
| Protein GI | 148543427 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
|---|
| TIGRFAM ID | [TIGR01910] acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAAGTCA GTGAAAAAGT CAAAGTACTG CAAGATTTAA TAAAAATCCA TTCTGTCAAT
GGAAATGAAG TTGAAGTAGC CCACTACTTA CAAAAACTTT TATCAAGTCA CGGAATTGAT
TCAAAAGTTG ATGAATTTGG TGACCGCCGT GCAAATTTGA TCGCGGAAAT CGGAACTGGT
GAAAGCAAAA AAATTCTTGG ACTTACTGGG CACCAAGACA CTGTGGCAGT ACCTAATCCA
GATCGCTGGC AACATGATCC CTTTGGCGGT GAAATTAACG GTGATTATGT TTTCGGTCGG
GGAGCCGCTG ACATGAAAAG CGGTCTGGCT GCTCAAGCCA TCGTCTTAAT CGAATTAAAA
GAAGCTGGTC AACTGCCATC AGGAACGGTT AGATTTATTG CTACCGCCGG AGAAGAACTT
GGTACTCCTG GTGCCTATCG ATTACAAAAA CAAGGAGTTG CCGATGATCT TGATGCATTA
GTAGTCGGTG AACCAACTGG CGGAAACGTT ATTTTTGCTC ACTCAGGAAG TATGAACTAT
CGTGTTACTA GCTATGGAAA GTCTTGTCAT AGTTCACATC CGCAAAACGG TATTAATGCA
ATTGAAGGGT TGCTAAAGTT TATCGAAGAA GAAAAACACC TTTTTGATAA TAGCAAGGAT
GATCAGTATC TCGGTAAAGT GCAGCATAGT ATTACAGTTA TTGATGGCGG GTCACAAGTT
AATACCATCC CCGACAGCGC TAGTTTACAT GGCAACATTC GTCCCACGGC AGCATTTAAT
AATATTAAAG TTGCAGATCG ATTAAACGAT GCGCTTGAAT ACATTAATCA CACAACTCCC
TTCCAATTAG AACTAAAAAT TATTCAAGAT TTCTATCCCA TTGCAACAGA ACCTAATAAT
GATTTTGTCC AAATCGCCCT CAATGCTGCT CAGCGCAATT ATCCAAATGA TATCAAACTC
GATATTATCA ATGGTGCAAC AGATGCGAGT GTATTTACAT TAAATCGGCC AGATCTTCCG
GTTGTAATTT TAGGTTGTGA TGATTGGAAT GCGGCTCATC AAAATGATGA ATATACAACT
ATTTCCAGTT ACGTCGCTAC AATTAAAGCT TATAAGCAAA TTATTCGTGA TTTCTTCAAA
GAATAA
|
|---|
| Protein sequence | MEVSEKVKVL QDLIKIHSVN GNEVEVAHYL QKLLSSHGID SKVDEFGDRR ANLIAEIGTG
ESKKILGLTG HQDTVAVPNP DRWQHDPFGG EINGDYVFGR GAADMKSGLA AQAIVLIELK
EAGQLPSGTV RFIATAGEEL GTPGAYRLQK QGVADDLDAL VVGEPTGGNV IFAHSGSMNY
RVTSYGKSCH SSHPQNGINA IEGLLKFIEE EKHLFDNSKD DQYLGKVQHS ITVIDGGSQV
NTIPDSASLH GNIRPTAAFN NIKVADRLND ALEYINHTTP FQLELKIIQD FYPIATEPNN
DFVQIALNAA QRNYPNDIKL DIINGATDAS VFTLNRPDLP VVILGCDDWN AAHQNDEYTT
ISSYVATIKA YKQIIRDFFK E
|
|---|
| |