| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lreu_0080 |
|---|
| Symbol | |
|---|
| ID | 5188758 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Lactobacillus reuteri DSM 20016 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009513 |
|---|
| Strand | + |
|---|
| Start bp | 94121 |
|---|
| End bp | 95662 |
|---|
| Gene Length | 1542 bp |
|---|
| Protein Length | 513 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 640589875 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001270692 |
|---|
| Protein GI | 148543322 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0438] Glycosyltransferase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 72 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTTTTTT TCCTAAACGA TAATATTCAA CGAAACAAAT CAGGAATTGA GCATGCGCAA
ATTAAGCGTC TGCATCTGTT TGAAAAATAT CATCAACCAG CTAAGATTGT TACCCGGCAA
TATTCGAATG AATTACACTT GGTAACAGCA GAAGCAGGGA TTGATGATCG TAACTTTATT
AACTTGTTTG ATTATTTTCA AGAGGCTTGT GAGGTCCCGC AAAAGAATAT TCGGATTAAA
GATATTCCGG TTAACCCCCA TTGGGAGCGC AAAGCTGATG GGATTAATTA TAATTATTAT
CAAAATGGCA AACGTATTCT CTATATTCGT CGGCGCAGTG ATACTGATCG GCGGGTAATT
AATATTCAAT ATTTTGATCA TTATGGAAAG CTTCTCAAAG TTAGTTGGTT TGACAGCCGC
GGTTTTATCT CGGTCGAACA ACTTTATGAC TGGGATGGAA AAATGGCAAC GGAAAACTAT
TACCGTCCAG ATGGAACCTT AGCAATCCAG TTAGCCCACC AGCAGGATAA GCGGGGAAAT
GAAATTAAAA CTTATCATCT CTTTAATTAT CATGGTCATG ACTACCAGTT TAGTGGATTC
GACCAGTTAA CCCGGTTCTT CCTTGATGAG CTGGTTGCTG ATAAACAAAT CTGTGGTGAA
GGTCCGATTG GCTTTATCGT TGACCGGGTT TATGAATTAG GCTGGGCAGT TCTGCACATG
AAACATCATG TTTTTCGGGT TCTCCAATTG CATAATGACC ATGTCAATAA TCCTGATGAT
ATGCTTCATT CTCCCCTTAA TTATAACTAT GATTGGGGAC TTAAGCACCT CCAAGATTGG
GATGGGGTCA TTGCCTTAAC TCCGCAACAA CAAGAAGATC TTCAAGACCG GTTTGGCAAG
TTTGGTGTAA AGATCTACCG GATTCCTGGT CCGATTGTTC CGGCGGCAGT TATTGATAAG
CGCCATGTTC CATTTAAAAA ACGAACGAAG AAACAAGTTG TCATGGTCGC CCGCTTGTCT
CCTGAAAAAC AGCAAGATCA CCTATTAAAA GCATGGCCAC AAGTACTAGC AGCAGTTCCA
GACGCCAAAC TTGATTTTTG GGGTTATGCC AATGATGACT TTGACAAGAC ACTCAATAAA
ATTGTAAAAG AGGAAGGGAT TAATAGTTCT GTGACCTTCC ATGGGTATAC AGATGACGTC
AATTCGGTTT ACGAAGATGC GCAATTACTT ATTTTGCCAA GTCGAGCTGA AGGGTTACCA
CTATCTCTAG TTGAGGCCCA ATCCCATGGT TTGCCGATTA TTGCTAATGA CATAAAATAT
GGTCCTTCAG ATGTCGTTAT TGATCGACAG GATGGATTGC TGACCAAGAA CGGTGATATT
GATGGACTGG CTCAAGCGAT CATTCGCTTA TTGCAAAATC AAGAGCAGTT AGCGCAGATG
AGTGAAAATG CGTATGCTGA TAGTGAGCGT TATTCTGAAC CAAACGTGAT GAAGCTATGG
AATGAACTAG TTAATGACAT GAAGGAAAAG GGAGAAGAGT AA
|
|---|
| Protein sequence | MLFFLNDNIQ RNKSGIEHAQ IKRLHLFEKY HQPAKIVTRQ YSNELHLVTA EAGIDDRNFI
NLFDYFQEAC EVPQKNIRIK DIPVNPHWER KADGINYNYY QNGKRILYIR RRSDTDRRVI
NIQYFDHYGK LLKVSWFDSR GFISVEQLYD WDGKMATENY YRPDGTLAIQ LAHQQDKRGN
EIKTYHLFNY HGHDYQFSGF DQLTRFFLDE LVADKQICGE GPIGFIVDRV YELGWAVLHM
KHHVFRVLQL HNDHVNNPDD MLHSPLNYNY DWGLKHLQDW DGVIALTPQQ QEDLQDRFGK
FGVKIYRIPG PIVPAAVIDK RHVPFKKRTK KQVVMVARLS PEKQQDHLLK AWPQVLAAVP
DAKLDFWGYA NDDFDKTLNK IVKEEGINSS VTFHGYTDDV NSVYEDAQLL ILPSRAEGLP
LSLVEAQSHG LPIIANDIKY GPSDVVIDRQ DGLLTKNGDI DGLAQAIIRL LQNQEQLAQM
SENAYADSER YSEPNVMKLW NELVNDMKEK GEE
|
|---|
| |