Gene Lreu_0036 details

Gene Information

• Locus tag: Lreu_0036
• ID: 5188824
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Lactobacillus reuteri DSM 20016
• Kingdom: Bacteria
• Replicon accession: NC_009513
• Strand: +
• Start bp: 39016
• End bp: 39714
• Gene Length: 699 bp
• Protein Length: 232 aa
• Translation table: 11
• GC content: 38%
• IMG OID: 640589832
• Product: ABC transporter related
• Protein accession: YP_001270649
• Protein GI: 148543279
• COG category: [V] Defense mechanisms
• COG ID: [COG1136] ABC-type antimicrobial peptide transport system, ATPase component

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 0.00248641
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGATCAAGC TAAAGAACAT TAATAAATAT TACCGTCAAG GTAGCCAACG TTTTCATGTT 
CTCCATGATA TTAATGTTGA CATTGAGCAA GGCGAATTAG TAGCAATTAT CGGTGAATCT 
GGGTCAGGGA AATCAACTTT GATTAATATT GTGGGCTTTC TTGATGATGA TTTTGAGGGA 
ACATACTTCT ACCAAAATCA CCCAATCCAT GATTATTCGC GAAAGCAGTT TTCAAATTTA 
CGAAATCAAA ATGTCGGTTT TGTTTTTCAA AATTTCAAAC TGCTACGTGG GTCAACCGTT 
GCAGATAATG TTGGATTACC CTTGCTATAT GCAGGAAAAC GACGCCGTGA AATTGGCGAA 
CGGGTTTCTG AAGTCTTAGA GCAAGTTGGT TTAGCCGGAT ATGAAGATCA ATTCCCTAAA 
AACATGTCTG GTGGTCAACA ACAAAGAGTA TCTATTGCCC GGGCAATATC AACGAACCCG 
AAATTTTTAA TTGCTGACGA ACCAACGGGA GCGCTTGATA CGGAAACAAG CCAAGAAGTT 
ATGAATCTTT TTAAGCGATT GAATCACGAA GAAGGAACAA CGATTATTAT GGTTACCCAT 
GATCCTCATG TCGCTGAACA ATGTGACCGA ATAATTAAAA TTATTGATGG TCGAATTGTG 
AGTGACAGTA AAGGCGGTGA ATATCATGCA GACAATTGA 

 

Protein sequence

MIKLKNINKY YRQGSQRFHV LHDINVDIEQ GELVAIIGES GSGKSTLINI VGFLDDDFEG 
TYFYQNHPIH DYSRKQFSNL RNQNVGFVFQ NFKLLRGSTV ADNVGLPLLY AGKRRREIGE 
RVSEVLEQVG LAGYEDQFPK NMSGGQQQRV SIARAISTNP KFLIADEPTG ALDTETSQEV 
MNLFKRLNHE EGTTIIMVTH DPHVAEQCDR IIKIIDGRIV SDSKGGEYHA DN