Gene Lreu_0020 details

Gene Information

• Locus tag: Lreu_0020
• ID: 5188747
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Lactobacillus reuteri DSM 20016
• Kingdom: Bacteria
• Replicon accession: NC_009513
• Strand: +
• Start bp: 21746
• End bp: 23611
• Gene Length: 1866 bp
• Protein Length: 621 aa
• Translation table: 11
• GC content: 38%
• IMG OID: 640589816
• Product: PAS/PAC sensor signal transduction histidine kinase
• Protein accession: YP_001270633
• Protein GI: 148543263
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG5002] Signal transduction histidine kinase
• TIGRFAM ID: [TIGR00229] PAS domain S-box

Plasmid Coverage information

• Num covering plasmid clones: 44
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGAACAGCA AGTTAAAATT TTATCAATCG ATTCGTTTTA AAATCGCTCT CGTATTCGTG 
TTAATTTTGA TGTTAACACT TGAATGTGTT GGGGCGGTTT TTGTGCGTCA ATTAGAGCAT 
CAAAACCTTA ATACGTTTAA GCAAACCATT GAATTACCGT CTTACGTTGA TAATTCTTTA 
GCAGAGCAGT TATCACGATC AAATACTAAA AAAGCTAACA AACAAATTAA TCAAATTCTT 
TCAGAAGTTA ATAATAATAA CATTTCTGAA ATCCGGGTAG TTGATAGTAA GAGTATTGTG 
CGGGGAACAA GCAACGCTGA TAATCGGAGT GCAATCGGTC AGAAAACAAC GGACCAAGCA 
ATCAAAGCAA CCTTATTAAA TAATAGGTCG CATACCGAAA ACCTGTACGA TAATTCAAAT 
CACACGCGTT ACTATGTCAA TGTGATTCCC CTCGTGGATA ACAGTAATAA TAACGTTGTG 
GGAGCTGTTT ACCTGCGAGC TAGTCTGGAA AGTGTCTACT CTAATATTAA TAATATTACG 
TTGGTATACT TATCCGCGGC AATGATTACT ATTGTCTTGA GTTTAATCTT GGCAATTATT 
ATTTCCCAGG AAATTACCCG CCCAATTGAA GAAATGAGGA AACAAACATT ACGAATTGCC 
CGGGGAGACT ATTCTGGTCA AGTAAAAGTA TTGGGAAATG ACGAGTTAGG ACAATTGGCA 
GGAGCAGTTA ATAATCTTTC TGTCCGGGTT GAAGAGGCAC AGGAGTCGAG CGATTCTGAG 
CGACGGCGGC TTGATAGTAT TTTATCCCAT ATGTCAGATG GGGTTTTAGC CACTGATCGT 
CGCGGAAATG TGACAATTGT AAATAATATG GCGTTACAGT TACTGGGTGT CGAAAATGAA 
GACGATTTAA TTGGTAAATC AATTATTGAT GTGTTAGATA TTCGTCATGA CTATACCGTT 
CGGCAACTAG TAAATGGTGA ACAGCGCGAG ATGATTATTG ATATGTCAAA CTCTGGCAAT 
AATTTGATCT TAAACGCTTA CTTCTCACCA ATTCAACGTG AATCTGGCTT TGTCAGTGGG 
CTTGTGTGTG TCCTTCATGA TGTAACGAGC CAGCAAAAAG AAGAACGCGA ACGGAAGCAA 
TTCGTTTCAA ACGTCTCGCA TGAGTTGCGG ACTCCATTAA CAAGTGTTAG AAGTTATGTC 
GAAGCATTAA GTGATGGTGC TTGGCAGGAT AAAGAAATTG CCCCTCAGTT CTTAAAGGTT 
GTCCAGGATG AGACGGACCG GATGATTCGA ATGATCAATG ACCTGTTGAG TCTATCACGG 
ATGGATGCAG GGACAACGAA GCTCAATCTG GAATACGTAA ATATCAATGA GTTATTTAAC 
TATATCTTGG ATCGTTTCGA TATGATTATT AAAAAAGAAG AAGATCCAAA AAAGAAAAAA 
TATACCATTG AACGATACTT TACTAAGAAA GATTTATGGG TTGAAATTGA TACTGATAAG 
TTTACCCAGG TAATTGATAA TATTATGAAT AACGCGATTA AGTATTCTCC AGATGGTGGT 
GTAATTACAA CACGATTACT GGAGACACAT AATCATGTTA TTTTAAGTAT TTCTGACCAA 
GGCCTAGGGA TTCCACGAAA AGATCTTGGA CGTATCTTTG ATCGATTCTT CCGCGTTGAT 
AAGGCAAGAA GCCGGAAGCA AGGAGGAACA GGTCTGGGAC TAGCTATTTC CAAGGAAGTT 
ATCAATATGC TTGGTGGACA AATTTGGGTT GATAGTGTAG AAGGCAAGGG TTCAACATTC 
TATATTTCCT TGCCATATGT ACCTTATGAG GAGGAAGACT GGGATGATGA AGAAGCTGAA 
AAGTAA 

 

Protein sequence

MNSKLKFYQS IRFKIALVFV LILMLTLECV GAVFVRQLEH QNLNTFKQTI ELPSYVDNSL 
AEQLSRSNTK KANKQINQIL SEVNNNNISE IRVVDSKSIV RGTSNADNRS AIGQKTTDQA 
IKATLLNNRS HTENLYDNSN HTRYYVNVIP LVDNSNNNVV GAVYLRASLE SVYSNINNIT 
LVYLSAAMIT IVLSLILAII ISQEITRPIE EMRKQTLRIA RGDYSGQVKV LGNDELGQLA 
GAVNNLSVRV EEAQESSDSE RRRLDSILSH MSDGVLATDR RGNVTIVNNM ALQLLGVENE 
DDLIGKSIID VLDIRHDYTV RQLVNGEQRE MIIDMSNSGN NLILNAYFSP IQRESGFVSG 
LVCVLHDVTS QQKEERERKQ FVSNVSHELR TPLTSVRSYV EALSDGAWQD KEIAPQFLKV 
VQDETDRMIR MINDLLSLSR MDAGTTKLNL EYVNINELFN YILDRFDMII KKEEDPKKKK 
YTIERYFTKK DLWVEIDTDK FTQVIDNIMN NAIKYSPDGG VITTRLLETH NHVILSISDQ 
GLGIPRKDLG RIFDRFFRVD KARSRKQGGT GLGLAISKEV INMLGGQIWV DSVEGKGSTF 
YISLPYVPYE EEDWDDEEAE K