| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_5288 |
|---|
| Symbol | |
|---|
| ID | 5190907 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | + |
|---|
| Start bp | 5936418 |
|---|
| End bp | 5937254 |
|---|
| Gene Length | 837 bp |
|---|
| Protein Length | 278 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 640589771 |
|---|
| Product | regulatory protein, IclR |
|---|
| Protein accession | YP_001270590 |
|---|
| Protein GI | 148550488 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1414] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.497587 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTCCTA GAACCTCAAC AAAAAGCGAA ACGACCGCTG CTGAAGAAGA TAAAAACCAG
CGCAGCACTG TGCAGTCTCT TGCCAAAGGA TTTCGAGTCT TGGAGGCCTT CACAGCGGAA
AGCGATGAGC TGACCCTGAG CCAGATTGCT GCCAAGGCCG AGCTCGACCC AGGCACGACC
TATCGCATGC TGAATACACT GGTGGACCTC GGCTATGTTT CTCGAATTCC TGAGAGCAAG
CGATTCTCCC TCACGCTCAA AATCCTCAAC TTGGGCTTCC ACGCCATTGC TCACACGGAC
TTGCGCAGTC TGGTTCGCCC AGTGCTCAGG GGGCTGGTAA GTGAAACTAG TGAAGCCGCA
AGCTTCGCCG TGTTGCAAGG CGCAGACGTC CTCTACCTGG AACGTGTCAG GGCTGGTATC
ACTCGGCTTG GAGTGGATAT TCGCATTGGC ACAACGGTGC CGGCTTGCCA GACAGCGATT
GGCCAATCAA TCCTCGCGTT CCTTCCTGAT CACGAAGTTG AGCGCATCAA AGAGCTTTCC
TCGTCCACGT CCTTCATGAG CAAATCTCTC TCACGGCCGT TGTCCGAGGT GTTGGAGCAG
ATCCGTAAGG ATGGGTACAT CATCACGGAA TCGCTGTTCG CCGAGGGCCT GCGCATCCTC
GCCGTTCCGG TCCTGGATAT CGACGGCTAC CCAGTTGGCG CCATCAGCAT TGCGGCGCCG
GCAGTGCGGT GCACCACGGA GGAACTTGAA CGTCGAGCGC TGTCCGTGAC CATCGCGGCG
GCGAAGAATA TCGGGCGAGC ACTACAAGCA AGCGGAAGCA TCAATTCCAG CCTGTAA
|
|---|
| Protein sequence | MAPRTSTKSE TTAAEEDKNQ RSTVQSLAKG FRVLEAFTAE SDELTLSQIA AKAELDPGTT
YRMLNTLVDL GYVSRIPESK RFSLTLKILN LGFHAIAHTD LRSLVRPVLR GLVSETSEAA
SFAVLQGADV LYLERVRAGI TRLGVDIRIG TTVPACQTAI GQSILAFLPD HEVERIKELS
SSTSFMSKSL SRPLSEVLEQ IRKDGYIITE SLFAEGLRIL AVPVLDIDGY PVGAISIAAP
AVRCTTEELE RRALSVTIAA AKNIGRALQA SGSINSSL
|
|---|
| |