| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_5249 |
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| Symbol | |
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| ID | 5193168 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | + |
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| Start bp | 5892851 |
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| End bp | 5893894 |
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| Gene Length | 1044 bp |
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| Protein Length | 347 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640589732 |
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| Product | histone deacetylase superfamily protein |
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| Protein accession | YP_001270551 |
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| Protein GI | 148550449 |
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| COG category | [B] Chromatin structure and dynamics
[Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG0123] Deacetylases, including yeast histone deacetylase and acetoin utilization protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.122072 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.307512 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGACGA TCTATTCCGA TGACCACCGC CTGCACCACG GCCGCTGCGA GCTGATCGAT
GGCAAGCTGA TGCCCTGTTT CGAAATGCCT TCGCGCGCCG ACCATGTGCT CGACCAAGTG
AAAACCCGCA ACCTCGGCGA CATCCAGGGC CCGACCGACT TCGGCCGTGC GCCGCTGTTG
CGCGTCCACA GCGCCGATTA CCTGGATTTC TTCGAAGGCG CCTGGGCGCG CTGGGCTGCA
CTGGGCCAAG AGGGTGACCT GCTGCCCTTC ACCTGGCCAG CCCGCACACT GCGCCAGGTC
AAGCCGACCG GCCTGCATGG CGAACTGGGT TACTACAGCT TCGATGCCGG CGCCCCCATC
ACCGCGGGTA CCTGGCAGGC GGCCTATAGT GCTGCACAAG TTGCCCTGAC CGGCCAGGCA
GCGATTCAGC AAGGCGCCCA TGCGGCGTTC GCCCTGTGCC GTCCGCCAGG GCACCACGCT
GCCGGCGAAG TGATGGGCGG CTACTGCTAT CTGAATAATG CCGCCATCGC TGCCCAGGCC
TTCCTCGACC AAGGCCGACG CAAGGTCGCC ATCCTTGACG TCGACTACCA CCACGGCAAC
GGTACCCAGG ACATCTTCTA CAGCCGCGAT GACGTGTTCT TCGCCTCGAT CCACGGCGAC
CCGCAGGACG AATTCCCGTT CTTCCTCGGC TATGCCGATG AAACAGGCGA AGGCGCAGGC
CAGGGCTACA ACATCAACTA CCCCTTGCCG GCCGGTAGCG ACTGGGCCGC CTGGAGTGCA
GCCCTGGAGG ATGCCTGCAA GCGCATCGCC AGCTATGACG CCGACGTGCT GGTCATCTCA
CTGGGTGTGG ACACCTTCAA GGACGACCCC ATCTCGCAGT TCAAGCTGGA CAGCCCGGAC
TACCTGGAAA TGGGCAAGCG CATCGGCCAA CTCGGCAAGC CGACCCTGTT CGTGATGGAA
GGCGGCTACG CTGTGGAGGA AATCGGCATC AACGCGGTCA ATGTGCTGGA AGGCTTCCAG
CGCGCCCAGC CAGGAGCCCG ATAA
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| Protein sequence | MLTIYSDDHR LHHGRCELID GKLMPCFEMP SRADHVLDQV KTRNLGDIQG PTDFGRAPLL
RVHSADYLDF FEGAWARWAA LGQEGDLLPF TWPARTLRQV KPTGLHGELG YYSFDAGAPI
TAGTWQAAYS AAQVALTGQA AIQQGAHAAF ALCRPPGHHA AGEVMGGYCY LNNAAIAAQA
FLDQGRRKVA ILDVDYHHGN GTQDIFYSRD DVFFASIHGD PQDEFPFFLG YADETGEGAG
QGYNINYPLP AGSDWAAWSA ALEDACKRIA SYDADVLVIS LGVDTFKDDP ISQFKLDSPD
YLEMGKRIGQ LGKPTLFVME GGYAVEEIGI NAVNVLEGFQ RAQPGAR
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