| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_5185 |
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| Symbol | |
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| ID | 5195038 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | + |
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| Start bp | 5828583 |
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| End bp | 5830073 |
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| Gene Length | 1491 bp |
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| Protein Length | 496 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640589668 |
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| Product | GntR family transcriptional regulator |
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| Protein accession | YP_001270487 |
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| Protein GI | 148550385 |
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| COG category | [E] Amino acid transport and metabolism
[K] Transcription |
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| COG ID | [COG1167] Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.0411857 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGTATT TTCAGCCCAA CTGTACCGGT CGCTATGCCA ATGCAGCGCA GGAGTATGCC
GTGACCCTCT ACCTGAATCT CGCCGAAATA CTCGGCGCCC GCATCGAGCA GGGCCTCTAT
CGCCCTGGCC AGCGCCTGCC GTCTGTACGC GCACTGAGTG AGGAGCACGG GGTCAGCCTG
AGCACCGTGC AGCAGGCCTA TCGCATACTC GAAGACAGCG GCATGGTCTC GCCGCGGCCC
AAGTCCGGCT ACTTCGTCAG CGACCAACGG CAGTTGCCGG CACTGCCCGC AGTCAGCCGC
CCGGCCCAGC GCCCGGTGGA CATCTCGCAG TGGGAACAGG TGCTGGAGCT GGTGCGCAGT
ACGCCGCGCC AGGATGTGGT GCAACTCGGC CGCGGCATGC CCGACATCGA CAGCCCTACC
CTGAAGCCGC TGCTGCGCAG CCTTGCCCAG TTGAGCCGGC GCCAGGACAT GCCTGGCCTG
TACTACGACA ACATCCACGG TAACCTGGCC CTGCGCGAAC AGGTGGCCCG GCTGATGCTC
GACTCCGGCT GCCGCCTGGG GCCGGCCGAC CTGGTGATCA CCACCGGCTG CCATGAGGCG
CTGTCATGCA GCATCCGCGC GGTCTGCGAG CCAGGCGACA TCGTCGCGGT CGACTCGCCC
AGCTTCCACG GCGCCATGCA AACCCTCAAA GGCTTGGGCA TGAAAGCGCT GGAAATCCCC
ACCGACCCGG TCACCGGCAT CAGCCTGGAG GCGCTGGAAC TGGCCCTGGA GCAGTGGCCG
ATCAAGCTCA TCCAGATCAC ACCCAGCTGC AACAACCCGC TGGGTTACAT CATGCCCGAG
GCACGCAAGA AGGCCCTGCT GAGCCTCGCC CAACGCTATG ACGTGGCAAT TCTGGAAGAC
GATGTGTACG GCGACCTGGC CTATACCTAC CCACGCCCAC GCACCCTGAA GTCGTTCGAC
GACGATGGCC GCGTGCTGCT CTGCAGTTCG TTCTCCAAAA CCCTGGCGCC CGGCCTGCGG
ATCGGCTGGG TGGCGCCCGG GCGCTACCTG GAGCGCGTGC TGCACATGAA ATACATCAGC
ACCGGCAGCA CCGCCAGCCA GCCTCAGCTG GCCATCGCTG ATTTCATCGC CGCCGGGCAC
TACCAGCCCC ATGTACGGCG CATGCGCAGC CAGTACCAGC GTGGCCGCGA CCTGATGAGC
GACTGGGTGA CCCGCTACTT CCCGGCGGGC ACCCGGGTCA GCCGGCCCCA GGGCGGCTTC
ATGCTGTGGG TGGAATTACC CGAACATCTC GATACGCTTC GGCTGAACCG CGCTTTACTG
GAGCAGGGCG TGCAGGTTGC CGTGGGCAGC ATCTTTTCGG CCTCGGGCAA GTTCCGCCAC
TGCCTGCGCA TGAACTTCGC CGCCAGGCCA ACGCCGCAAA TCGAAGCCTC CGTGCGTAAG
GTAGGTGAAA CCGCCCTTCG TCTACTGGAT GACGAAAGCG CCGACGCGTA A
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| Protein sequence | MLYFQPNCTG RYANAAQEYA VTLYLNLAEI LGARIEQGLY RPGQRLPSVR ALSEEHGVSL
STVQQAYRIL EDSGMVSPRP KSGYFVSDQR QLPALPAVSR PAQRPVDISQ WEQVLELVRS
TPRQDVVQLG RGMPDIDSPT LKPLLRSLAQ LSRRQDMPGL YYDNIHGNLA LREQVARLML
DSGCRLGPAD LVITTGCHEA LSCSIRAVCE PGDIVAVDSP SFHGAMQTLK GLGMKALEIP
TDPVTGISLE ALELALEQWP IKLIQITPSC NNPLGYIMPE ARKKALLSLA QRYDVAILED
DVYGDLAYTY PRPRTLKSFD DDGRVLLCSS FSKTLAPGLR IGWVAPGRYL ERVLHMKYIS
TGSTASQPQL AIADFIAAGH YQPHVRRMRS QYQRGRDLMS DWVTRYFPAG TRVSRPQGGF
MLWVELPEHL DTLRLNRALL EQGVQVAVGS IFSASGKFRH CLRMNFAARP TPQIEASVRK
VGETALRLLD DESADA
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