Gene Pput_5178 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPput_5178 
Symbol 
ID5194688 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida F1 
KingdomBacteria 
Replicon accessionNC_009512 
Strand
Start bp5822417 
End bp5823016 
Gene Length600 bp 
Protein Length199 aa 
Translation table11 
GC content60% 
IMG OID640589661 
ProductXRE family transcriptional regulator 
Protein accessionYP_001270480 
Protein GI148550378 
COG category[K] Transcription 
COG ID[COG1396] Predicted transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.174471 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.155373 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATATCGT TCACATCCAC TCCCCTTTCA CCGTTTCAGG AGGCTCCAGC TTTGGACGTC 
GGCGAACGAC TGCAAGCCAT CCGCAAGCTC AAGGGCCTGT CGCAGCGCGA ACTCGCCAAG
CGTGCTGGCG TGACCAACAG CACCATCTCG ATGATCGAGA AGAACAGCGT AAGCCCCTCT
ATCAGCTCGC TGCGCAAGGT GCTGAGCGGC ATTCCCATGT CCATGGTCGA ATTCTTTTCG
GTCGAGCTGG AGCCGCAAAG CCCGACTCAG ATCGTCTACA AGGCCCACGA GCTGATCGAT
ATCTCGGACG GTGCGGTGAC CATGAAGCTG GTGGGCAAGT CGCACCCCAA CCGTGCCATC
GCTTTTCTGA CCGAGGTGTA CCCGCCAGGT GCGGACACCG GTGCCGAGAT GCTGACCCAC
GACGGCGAGG AGACCGGTAT CCTGCTTGAA GGCCGCCTGG AACTGGTGGT CGGCAACGAG
ATTTTCGTTC TCGAAGAAGG CGACAGCTAC TACTTCGAAA GCACCCGCCC GCACCGCTTC
CGCAACCCAT TCGACCAGCC GGCGCGGCTG ATCAGTGCGG CGACGCCTTC AAACTTTTGA
 
Protein sequence
MISFTSTPLS PFQEAPALDV GERLQAIRKL KGLSQRELAK RAGVTNSTIS MIEKNSVSPS 
ISSLRKVLSG IPMSMVEFFS VELEPQSPTQ IVYKAHELID ISDGAVTMKL VGKSHPNRAI
AFLTEVYPPG ADTGAEMLTH DGEETGILLE GRLELVVGNE IFVLEEGDSY YFESTRPHRF
RNPFDQPARL ISAATPSNF