| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_5167 |
|---|
| Symbol | |
|---|
| ID | 5193229 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | - |
|---|
| Start bp | 5806782 |
|---|
| End bp | 5808218 |
|---|
| Gene Length | 1437 bp |
|---|
| Protein Length | 478 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640589650 |
|---|
| Product | FAD dependent oxidoreductase |
|---|
| Protein accession | YP_001270469 |
|---|
| Protein GI | 148550367 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.547008 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.0506683 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTGCATG GCCGGGGGCC TGGCCCCCGG TTCGCGGGTA GACCCGCTCC TACAGGGTTC
GTCCAAGCGA CACCGACCCC TGTAGGAGCG GGTTTACCCG CGAAAGGGCC GCCCTGCGGC
CCCAACAAGA ACAAATTGCT GGAGCCGGCC ATGTCCGAAC TGCGTCAACA ATGCTTGTGG
GAACACGTCA GCAAACCGAC CGTCGCCGCC CAGGCCCTGG CCGGTGAGCA CAAGGCCGAT
GTCTGTGTGA TCGGCGGCGG CATTACCGGC CTGTCGGCGG CCATCCATCT GCTCGAACAG
GGCAAGTCGG TGATCGTGCT GGAGGCCTGG AAGATCGGCC ACGGTGGCTC CGGGCGCAAC
GTCGGCTTGG TCAACGCCGG TACCTGGATC CGCCCCGACG ACGTCGAGGC CACCCTTGGC
CAGAAGCAGG GTAGCCGCCT GAACAAGGTG CTTGGCGAAG CCCCGGCTGA AGTGTTCGCC
ATGATCGAGC GCCTCGGCAT CGACTGCCAG GCCCAGCACA AAGGCACGCT GCACATGGCG
CACAACGCCA CCGGTATCGC CGACCTCGAA GCGCGTCACG AACAATGGCG CCGCCGAGGT
GCCGACGTCG AGCTGCTGAC CGGTGCCCAG TGCCAGGAAT ACTGCGGTAC CGACAAGATT
TCCGCTGCGC TGCTTGATCG CCGTGCTGGC ACCATCAACC CCATGGGCTA CACCCAGGGC
CTGGCGGCTG CTGTAACGCG CCTGGGCGGC AAGATTTTCC AGCAGTCTTC GGTCGAAGGC
CTGGAGCGTG AAGGTGATGG CTGGCGGGTG AAGACTGCGC GTGGCGCTGT GCGCGCCGAA
AAGGTGGTGA TTTCCACCGG CGCCTACACC GAAGGTGACT GGAGCAACCT GCAGAAGCAG
TTCTTCCGCG GTTATTACTA TCAGGTAGCC TCCAAACCGC TGCAGGGCAC CGCAGCCGAC
AAGGTGCTGC CACATGGCCA AGGTTCGTGG GACACCCGCA CCGTGCTCAG CAGCATCCGC
CGCGACGATC AGGGCCGCCT GCTGCTCGGC AGCCTGGGCC GGGTCGACAA CAAGCCAACC
TGGTTCGTGC GCAGCTGGGC CGACCGCATC CAGGGCCATT ACTACCCCGA GCTGGGCAAG
GTCGAGTGGG AAATGCACTG GACCGGCTGC ATCGACTTCA CGCCTGACCA CCTGATGCGC
CTGTTCGAGC CGGCGCCTGG GTTGGTGGCG GTGACCGGGT ACAACGGGCG CGGTAATACC
ACCGGCACCG TGATTGGCCG GGCGTTTGCC GAGTTCCTGC TCAAGGGCGA GGCGGACAGC
CTGCCGATTC CGTTTTCGCC GATGAGCGGT GTGAGCGCGC CTTCGCTGCG GACGGCGTTC
TACGAGTCTG GCTTCTCGCT GTACCACGCG GGGCAGTGCC TGAGGGTTGT GTTGTAA
|
|---|
| Protein sequence | MLHGRGPGPR FAGRPAPTGF VQATPTPVGA GLPAKGPPCG PNKNKLLEPA MSELRQQCLW
EHVSKPTVAA QALAGEHKAD VCVIGGGITG LSAAIHLLEQ GKSVIVLEAW KIGHGGSGRN
VGLVNAGTWI RPDDVEATLG QKQGSRLNKV LGEAPAEVFA MIERLGIDCQ AQHKGTLHMA
HNATGIADLE ARHEQWRRRG ADVELLTGAQ CQEYCGTDKI SAALLDRRAG TINPMGYTQG
LAAAVTRLGG KIFQQSSVEG LEREGDGWRV KTARGAVRAE KVVISTGAYT EGDWSNLQKQ
FFRGYYYQVA SKPLQGTAAD KVLPHGQGSW DTRTVLSSIR RDDQGRLLLG SLGRVDNKPT
WFVRSWADRI QGHYYPELGK VEWEMHWTGC IDFTPDHLMR LFEPAPGLVA VTGYNGRGNT
TGTVIGRAFA EFLLKGEADS LPIPFSPMSG VSAPSLRTAF YESGFSLYHA GQCLRVVL
|
|---|
| |