| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_5160 |
|---|
| Symbol | |
|---|
| ID | 5191903 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | + |
|---|
| Start bp | 5797838 |
|---|
| End bp | 5799100 |
|---|
| Gene Length | 1263 bp |
|---|
| Protein Length | 420 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 640589643 |
|---|
| Product | outer membrane porin |
|---|
| Protein accession | YP_001270462 |
|---|
| Protein GI | 148550360 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.264325 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCCGCG CCACTCACGG ACCAGGCCGC GCCCTGCTCG CCACCCTCGC CCTCTGGCCG
GCGCTGAGCC ACGCCGAGGC GCCCGGCTGG TCGCTGCTCA GCCGCAACTA TTTCCTGCAC
AGTGACTTCC GCTCGCCCTC CGGCAGCGGC CAGAACTACC GCCAGGAATG GGCCCAAGGC
TTCATCGGCG AGGTGCGTTC CGGTTTCACC GAAGGCACTG TCGGCGTCGG CATCGATGCC
CATGGCTTTC TTGGCCTCAA GCTCGACGGC GGCCGCGGCC ATAGCGGCAC CGGCCTGCTG
CCACGCGACA GCGATGGCCG CGCCGAGTCC GAGTACTCCA GCGCCGGTGC CGCGCTCAAA
ATGCAGTTAG GCAACACCCA ACTGCGCTAT GGCGAGATGA TGGTGGAAAC CCCGGTGTTC
GACACCGGTG ACAAACGCCT GCACCCGGAA TACGCCACCG GCTGGTGGGT GGAAAACACC
GACCAGCCCG ACTGGCGCCT GCAGGCCGGG CGTTTCACTG CCTTCAACAA CCAGGACAAC
AGCTCCACCC ACGACGACTT CAGCGGCTAC GGCGCGACCA CCCACAACCG GGCCATCAGC
CTGGCCGGTG CCACCTTCGC ACCCAACGGG CCGTTCGGCG CCGCACTGTA TGCCGGGCAG
CTGGAAAACA CCTGGCGCCA GGCCTACCTC AACCTGAACG TGGCCGAGGG CAACTGGCGC
CTGGACGGCA ACCTGTACAA AACCCGCGAT ACCGGCAACG CCAGCGCCGG GGCGATCGAC
ACCCTCGCCT ACAGCCTGCT GGCCAGGTAC AGCTTCGGCG CACAGGCGCT GAGCCTGGCC
TACCAGAAGG TCGAGGGCGA CACCCCGTTC GACTTCGTCG GCGGCGACGC CATCTACCTG
GCCAACGCGA TCAAGTACGC CGACTTCAAC GGCCCTGGCG AGCACTCGTG GCAACTGCGC
TATGACCTGA ACTTCGCCAC CCTCGGCGCG CCTGGCCTGA GCCTGATGGG CCGCTATGTC
AGCGGCCGCG GCATCGACGG CAGCCATGCG CCTGCGGGCG GCGCCTATGT GAACCAGTAC
GGCGACGGCG GCAAGCACTG GGAACGCGAC ATCGACCTGA AATACGTGGT GCAGTCGGGG
GCTGCCAAGG ACCTGAGCCT GTCGTTCTCC CACGTCAGCC ACCGCGCCAA CCAGGCCCAG
GCGGGCAATG ATATCGACCG CATCTACCTG ATCATCGAAT ACCCACTCAA AGGCAGCTTC
TGA
|
|---|
| Protein sequence | MIRATHGPGR ALLATLALWP ALSHAEAPGW SLLSRNYFLH SDFRSPSGSG QNYRQEWAQG
FIGEVRSGFT EGTVGVGIDA HGFLGLKLDG GRGHSGTGLL PRDSDGRAES EYSSAGAALK
MQLGNTQLRY GEMMVETPVF DTGDKRLHPE YATGWWVENT DQPDWRLQAG RFTAFNNQDN
SSTHDDFSGY GATTHNRAIS LAGATFAPNG PFGAALYAGQ LENTWRQAYL NLNVAEGNWR
LDGNLYKTRD TGNASAGAID TLAYSLLARY SFGAQALSLA YQKVEGDTPF DFVGGDAIYL
ANAIKYADFN GPGEHSWQLR YDLNFATLGA PGLSLMGRYV SGRGIDGSHA PAGGAYVNQY
GDGGKHWERD IDLKYVVQSG AAKDLSLSFS HVSHRANQAQ AGNDIDRIYL IIEYPLKGSF
|
|---|
| |