| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_5122 |
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| Symbol | |
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| ID | 5191704 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | - |
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| Start bp | 5754576 |
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| End bp | 5756042 |
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| Gene Length | 1467 bp |
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| Protein Length | 488 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640589605 |
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| Product | UbiD family decarboxylase |
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| Protein accession | YP_001270424 |
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| Protein GI | 148550322 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0043] 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases |
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| TIGRFAM ID | [TIGR00148] UbiD family decarboxylases |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGTATC GCGACTTGCG CGACTTCATC CGTGGCCTGG AACAGCGCGG AGAGCTCAAG
CGCATCCAGG TACCGATCTC CCCCGTCCTG GAAATGACCG AGGTCTGCGA CCGCACCCTG
CGCGCCAAGG GCCCGGCATT GTTGTTCGAA AAGCCCACCG GCTTCGACAT CCCAGTGCTG
GGCAACCTGT TCGGTACTCC GGAGCGGGTG GCCATGGGCA TGGGCGCCGA GTCGGTCAGC
GAACTGCGGG AAATCGGCAA GCTGCTGGCC TTTCTCAAGG AGCCCGAGCC GCCCAAGGGC
CTGAAGGACG CCTGGTCGAA GCTGCCGATC TTCAAGAAGG TCGTGTCGAT GGCGCCAAAA
GTGGTCAAGG ACGCGGTGTG CCAGGAAGTG GTGGTCGAGG GTGACGATGT CGACCTTGGC
ACGCTGCCGA TTCAGCACTG CTGGCCTGGC GACGTGGCGC CGCTGATTAC CTGGGGCCTC
ACCGTGACCC GTGGCCCGAA CAAGGACCGC CAGAACCTGG GCATCTACCG CCAGCAGGTG
ATCGGCCGCA ACAAGGTGAT CATGCGCTGG CTCAGCCACC GTGGCGGCGC CCTCGACTAC
CGAGAGTGGT GCGAGAAGAA CCCCGGCCAG CCGTTTCCGG TCGCCGTGGC CCTGGGCGCT
GACCCAGCGA CCATTCTCGG CGCGGTGACC CCGGTCCCGG ACACCCTTTC CGAGTACGCC
TTCGCCGGCC TGCTGCGAGG TAATCGCACC GAACTGGTCA AGTGCCGTGG CAGCAACCTG
CAGGTACCGG CAACCGCCGA GATCATTCTG GAAGGGGTGA TCCACCCAGG CGAAATGGCC
CCGGAAGGCC CTTACGGCGA TCACACGGGC TACTACAACG AAGTGGACAG TTTCCCGGTG
TTCACCGTTG AGCGCATCAC CCACCGGCAA AAACCGATCT ACCACAGCAC CTACACCGGC
CGGCCGCCAG ATGAGCCGGC CATTCTCGGC GTGGCGCTGA ACGAAGTGTT CGTGCCGATC
CTGCAGAAGC AGTTCCCGGA AATCACCGAC TTCTACCTGC CGCCGGAAGG CTGCTCGTAC
CGGATGGCGG TGGTGACCAT GAAGAAACAG TACCCAGGCC ACGCCAAGCG CGTAATGCTG
GGTGTGTGGT CGTTCCTGCG ACAGTTCATG TACACCAAGT TCGTTATTGT CACCGATGAC
GATATCAACG CTCGTGACTG GAACGATGTG ATCTGGGCCA TTACCACGCG CATGGACCCC
AAGCGTGATA CGGTAATGAT TGACAATACC CCGATCGACT ACCTGGACTT TGCGTCACCG
GTGTCGGGGC TGGGTTCGAA GATGGGCCTG GACGCTACGC ACAAGTGGCC GGGCGAGACT
ACACGCGAAT GGGGCCGGGT CATCGTCAAG GATGAGGCCG TCACCCGCCG TATCGATGAG
CTGTGGGATC AGTTGGGAAT AGATTGA
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| Protein sequence | MQYRDLRDFI RGLEQRGELK RIQVPISPVL EMTEVCDRTL RAKGPALLFE KPTGFDIPVL
GNLFGTPERV AMGMGAESVS ELREIGKLLA FLKEPEPPKG LKDAWSKLPI FKKVVSMAPK
VVKDAVCQEV VVEGDDVDLG TLPIQHCWPG DVAPLITWGL TVTRGPNKDR QNLGIYRQQV
IGRNKVIMRW LSHRGGALDY REWCEKNPGQ PFPVAVALGA DPATILGAVT PVPDTLSEYA
FAGLLRGNRT ELVKCRGSNL QVPATAEIIL EGVIHPGEMA PEGPYGDHTG YYNEVDSFPV
FTVERITHRQ KPIYHSTYTG RPPDEPAILG VALNEVFVPI LQKQFPEITD FYLPPEGCSY
RMAVVTMKKQ YPGHAKRVML GVWSFLRQFM YTKFVIVTDD DINARDWNDV IWAITTRMDP
KRDTVMIDNT PIDYLDFASP VSGLGSKMGL DATHKWPGET TREWGRVIVK DEAVTRRIDE
LWDQLGID
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