Gene Pput_5116 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPput_5116 
Symbol 
ID5193205 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida F1 
KingdomBacteria 
Replicon accessionNC_009512 
Strand
Start bp5749115 
End bp5750227 
Gene Length1113 bp 
Protein Length370 aa 
Translation table11 
GC content64% 
IMG OID640589599 
ProductABC-2 type transporter 
Protein accessionYP_001270418 
Protein GI148550316 
COG category[V] Defense mechanisms 
COG ID[COG0842] ABC-type multidrug transport system, permease component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value0.75858 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCGCGCC TGAACCACAC CCTGCGCCTG GGCTTGAAAG AACTGACCAG CCTGCGCCAT 
GACAGCGTCC TGCTGCTGTT CCTGCTATAT GCCTTCAGCG TGGCGATCTA CATGCCGGCA
GCCGGCTCGG TGATCGGTGT ACACAACGCC AGCGTGGCGG TGGTGGATGA AGACCATAGC
CTGCTCTCGC GCAAGCTCAG CGAAGCCCTG CAACCGCCCG AGTTCCAGCC AGCCGTGCCG
CTGCCTCCGC AGCGCCTGGA CCAGGCCATG GACAGCGGCC AGTACACCTT CGTCATCAAC
ATACCGGTGA ACTTCCAGAG CGACCTGCTG GCCGGGCGCT CGCCGGAGCT GCAGATCAAC
GTCGATGCTA CAGCCATGAG CCAAGCGTTC ATGGGCGCCG GCTACATCGG CCGCATCTTC
GAGCGCGAGC TGCTCGACTA CAGCCAGCGT GGTAACGAGC AAAGCCCGGT GCTGATCAAC
CCCAAGGCGC TGTTCAACCC CAACCTGGAG GGGGGCTGGT TTCTGGCCGT GATCCAGATC
GTCAACAACA TCACCATCCT GGCGATCATC CTCACCGGGA CCGCGCTGCT GCGCGAGCGT
GAGCATGGCA CCCTCGACCA CCTGCTGGTG CTGCCGCTGA CCGCGCTGGA GATCATGCTG
GCCAAGATCG GCAGCAATGC GCTGGTGGTG GTGATCTGCA CCTGGATTTC GTTGGTGGTA
GTCGTCAAAG GTGCACTGGG CGTTCCGCTG TCTGGCTCGA TGGGGCTGTT CCTGGCCGTG
ACCGCGCTGT ACCTGTTCGC CAGTACATCG CTGGGCATTT TCCTCGCCAC CCTGGCGCGC
TCGACGCCGC AGTTCGGCCT GCTGGCGATC CCGGTGATCA TCCCGATGCT GTTGCTGTCC
GGCGGCAGCA CACCTCTGGA CAGCATGCCG CAGTGGCTGC AGTGGGTGAT GCAGGGGTCA
CCCTCAACGC ACTTTGTCAG CCTGAGTGCC GCAATCCTGT TCAGGGATGC CGGGTGGGCG
GTGGTATGGC CGGATATCCT GGCGCTGACG CTGATCGGCC TGGTGTTCTT CAGCGTGGCG
CTGGCACGGT TTCGTCGGAG CCTGGCGTCT TGA
 
Protein sequence
MSRLNHTLRL GLKELTSLRH DSVLLLFLLY AFSVAIYMPA AGSVIGVHNA SVAVVDEDHS 
LLSRKLSEAL QPPEFQPAVP LPPQRLDQAM DSGQYTFVIN IPVNFQSDLL AGRSPELQIN
VDATAMSQAF MGAGYIGRIF ERELLDYSQR GNEQSPVLIN PKALFNPNLE GGWFLAVIQI
VNNITILAII LTGTALLRER EHGTLDHLLV LPLTALEIML AKIGSNALVV VICTWISLVV
VVKGALGVPL SGSMGLFLAV TALYLFASTS LGIFLATLAR STPQFGLLAI PVIIPMLLLS
GGSTPLDSMP QWLQWVMQGS PSTHFVSLSA AILFRDAGWA VVWPDILALT LIGLVFFSVA
LARFRRSLAS