Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_5116 |
Symbol | |
ID | 5193205 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | + |
Start bp | 5749115 |
End bp | 5750227 |
Gene Length | 1113 bp |
Protein Length | 370 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 640589599 |
Product | ABC-2 type transporter |
Protein accession | YP_001270418 |
Protein GI | 148550316 |
COG category | [V] Defense mechanisms |
COG ID | [COG0842] ABC-type multidrug transport system, permease component |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 0.75858 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGTCGCGCC TGAACCACAC CCTGCGCCTG GGCTTGAAAG AACTGACCAG CCTGCGCCAT GACAGCGTCC TGCTGCTGTT CCTGCTATAT GCCTTCAGCG TGGCGATCTA CATGCCGGCA GCCGGCTCGG TGATCGGTGT ACACAACGCC AGCGTGGCGG TGGTGGATGA AGACCATAGC CTGCTCTCGC GCAAGCTCAG CGAAGCCCTG CAACCGCCCG AGTTCCAGCC AGCCGTGCCG CTGCCTCCGC AGCGCCTGGA CCAGGCCATG GACAGCGGCC AGTACACCTT CGTCATCAAC ATACCGGTGA ACTTCCAGAG CGACCTGCTG GCCGGGCGCT CGCCGGAGCT GCAGATCAAC GTCGATGCTA CAGCCATGAG CCAAGCGTTC ATGGGCGCCG GCTACATCGG CCGCATCTTC GAGCGCGAGC TGCTCGACTA CAGCCAGCGT GGTAACGAGC AAAGCCCGGT GCTGATCAAC CCCAAGGCGC TGTTCAACCC CAACCTGGAG GGGGGCTGGT TTCTGGCCGT GATCCAGATC GTCAACAACA TCACCATCCT GGCGATCATC CTCACCGGGA CCGCGCTGCT GCGCGAGCGT GAGCATGGCA CCCTCGACCA CCTGCTGGTG CTGCCGCTGA CCGCGCTGGA GATCATGCTG GCCAAGATCG GCAGCAATGC GCTGGTGGTG GTGATCTGCA CCTGGATTTC GTTGGTGGTA GTCGTCAAAG GTGCACTGGG CGTTCCGCTG TCTGGCTCGA TGGGGCTGTT CCTGGCCGTG ACCGCGCTGT ACCTGTTCGC CAGTACATCG CTGGGCATTT TCCTCGCCAC CCTGGCGCGC TCGACGCCGC AGTTCGGCCT GCTGGCGATC CCGGTGATCA TCCCGATGCT GTTGCTGTCC GGCGGCAGCA CACCTCTGGA CAGCATGCCG CAGTGGCTGC AGTGGGTGAT GCAGGGGTCA CCCTCAACGC ACTTTGTCAG CCTGAGTGCC GCAATCCTGT TCAGGGATGC CGGGTGGGCG GTGGTATGGC CGGATATCCT GGCGCTGACG CTGATCGGCC TGGTGTTCTT CAGCGTGGCG CTGGCACGGT TTCGTCGGAG CCTGGCGTCT TGA
|
Protein sequence | MSRLNHTLRL GLKELTSLRH DSVLLLFLLY AFSVAIYMPA AGSVIGVHNA SVAVVDEDHS LLSRKLSEAL QPPEFQPAVP LPPQRLDQAM DSGQYTFVIN IPVNFQSDLL AGRSPELQIN VDATAMSQAF MGAGYIGRIF ERELLDYSQR GNEQSPVLIN PKALFNPNLE GGWFLAVIQI VNNITILAII LTGTALLRER EHGTLDHLLV LPLTALEIML AKIGSNALVV VICTWISLVV VVKGALGVPL SGSMGLFLAV TALYLFASTS LGIFLATLAR STPQFGLLAI PVIIPMLLLS GGSTPLDSMP QWLQWVMQGS PSTHFVSLSA AILFRDAGWA VVWPDILALT LIGLVFFSVA LARFRRSLAS
|
| |